Brassica oleracea (wild cabbage): 106335445
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Entry
106335445 CDS
T04124
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC106335445
KO
K06100
symplekin
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106335445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106335445
03019 Messenger RNA biogenesis [BR:
boe03019
]
106335445
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106335445
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
106335445
U7-dependent histone pre-mRNA processing factors
106335445
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
AAA_lid_9
Motif
Other DBs
NCBI-GeneID:
106335445
NCBI-ProteinID:
XP_013629420
LinkDB
All DBs
Position
C3:51094588..51105608
Genome browser
AA seq
1311 aa
AA seq
DB search
MAAATARAQALSLLAAANNHGDLAVKLSSLRQVKEILLSLDPSLSAEIFPYLTELHSSRE
ILVRKSLLEIIEEVGLRMLDHSYALVTVLLVLARDEDPIVAKKAVSVGTAFYRSILEEMA
MQFHHRGKVDRWVGELWTWMVKFKDVVFSTALEPGSVGVKVLALKFMETFILLFTPDASD
PENFSNEGSRQMFNISWLAGGHPILNSATLMSEANRTFGILQDLVQSAGRLPGALTVAVV
SCLAVVARKRPVHYNTVLSVLLDFHPNLVTVKGCHAASVQYSIRTALLGFLRCTSSPMIE
SRDKLLRALRAMNASDVADQAVRQVDKLIRNNERFARENWSGKSNQAISHPNSWDLSKKR
KMSQGEDDTINGEAAPKLLRHNTNMHLTPQVKISDSPHGPVSINGISPANHPSDSEPTPV
EQMVSMIGALLAEGDRGAASLDILISQLHPDMLADIVITSMKHLPSSPPTLTTSLATPAD
IVDSMRSPTLQPQLPFDPTLPAGLSVSDVPSLNSAVADPRRDPRRDPRRTDPRRLNSSVG
EGKEPVPVQMDISTLPSYPLSVPAVTAGASSSVHLTTKEHSQNKVGASSIIRIVDQPDCR
EDLFTAPCECVYPSKGKSSLDVPHSPCKEDEGIRETKFAGSERKCRDDLVSIPDFDQHSP
SESGPDFDLQPPVASDITVEEESYRELASVPSFVELTTEQSETVGKLALERIIESDRHVC
GFDCNKIRMPLIARFIAKIDAGNDVAAILREHISVDHREFKGHELVLHILYHLHSMANLD
TDETSSYAAMYENFLITVARSFLDALPASDKSFSRLFGEAPHLPDSAIKLLDELCSTRHD
PTGREISDSERVTQGLGAVWSLILVRPNERKAFLAIALNCSVHSEEDIRAKAIRLVTNKL
YHLTYISEHVEKFATDMLLTAVNSEADLSQTGFIAEGIKTEAKSQITIDSPSSRTSDTHS
QQDLQTSRDVSVLSFAEAQRLISLFFALCKKKPSVLRLVFEVYGKAPKTVVQAFHRHIPI
LIRELGSSYKELLHIISVPPKGSENLLSLVLQILTQELAPSSDLITTVKHLYETKLKDVS
ILIPLLSSLTKDEVLPIFPPLLNLPPEKFQLALAHILQGSAHTGPALTPAEVLIAIHDVV
PEKNGPHXKITDACSACFEQRTVFTQQVLAKALGQMVDRTPLPLLFMRTVIQAVDAFPTL
VDVVMEILSKLVSRQIWRLPKLWPGFLKCVSQTQPHSFPVLLELPMPQLESIMKKFPDLR
PSLATYANQPTIRASIPNPALSVLGLENGQDSRSQMHPSDAASSIHGAALT
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgcgacagccagggcgcaggcgctctctctcctcgccgctgccaacaaccac
ggcgatttggcggtgaagctctcgtctctcagacaggtgaaggagatattgctctcgctc
gacccctctctctccgccgagattttcccctatctcacagaactccactcgtctcgtgaa
atcctagttcgcaaatcccttctcgagatcattgaggaggttggtttgaggatgctggat
cattcttatgctctagtgactgtcttgctagtcttagcaagggatgaggatccgattgtt
gcaaagaaagctgtttctgttggcacagctttctatcgcagcatcttggaggagatggca
atgcagtttcatcatcgtggtaaagttgatcgttgggttggggaactatggacatggatg
gttaagttcaaagatgttgtcttttctactgcattggagcctggtagcgtaggggtgaaa
gttttggcgctaaagtttatggagacgtttattttgctatttactcctgatgcatctgat
cctgagaatttttccaacgaagggagtaggcagatgtttaacatatcctggcttgctggc
ggtcaccccattctaaattctgcaacgcttatgtctgaagcaaatagaacgtttggtatc
ttacaagatctcgtacagtcggctggtcgtttaccgggtgcactgacggtagctgttgtt
agttgtcttgcggtggtagcgaggaagaggcctgtccactacaacactgtcctttctgtt
ctgctggattttcacccaaatcttgtgacagtaaaggggtgccatgctgcaagcgttcag
tattccattagaactgccttactgggatttcttagatgtacttcctcacctatgatagag
tcaagagacaagcttcttagagcgcttcgagcaatgaatgcttcagatgttgctgatcaa
gctgtccgtcaagttgataaattgatcagaaataatgagcgctttgcacgtgaaaattgg
tcaggcaagagtaaccaggcgattagtcacccaaattcttgggatttgtcaaagaaacga
aaaatgtcccagggtgaagatgatacaatcaatggagaggctgctccgaagctcttacgc
cataatactaacatgcatttgactccgcaagttaaaataagtgattctccacatggaccg
gtctctatcaatggcatatcccctgcaaaccatccttcggacagtgagccgactccagtg
gaacaaatggtttctatgattggtgctttgcttgctgaaggagacagaggagctgcatca
cttgatattctcatttctcagctccatccagatatgcttgctgatattgtaataacaagc
atgaaacacttgcctagtagccctcctacattgacaacttcactggctactccggcggat
atcgtggattccatgcgttccccaactcttcagccacaacttcctttcgatccaaccctt
cctgcggggttatcagtttccgatgtgcctagtttgaatagcgcagttgccgaccctaga
cgtgacccaagaagggatccccgtcgcacggatccaagacgtttaaattcatctgtaggt
gaaggtaaagaaccagtcccagttcagatggacatctcgaccttaccgagctatccactt
tcggttcctgctgtcacggcaggggctagtagttcagtgcatctaacaacaaaagagcat
agccaaaacaaggtgggggcaagttcaattatcagaatagttgatcagcctgattgcagg
gaggatttgtttactgctccctgcgagtgtgtttatccctcaaagggcaaatcatcttta
gatgttccacactctccttgcaaggaagatgaagggatcagagaaacaaagtttgcaggt
tctgaaagaaagtgcagggatgatctggtgtctatcccagattttgatcaacattcgcct
tcagaatcaggcccagattttgatctacaaccccctgttgcgtctgacattactgtagaa
gaggaaagctatcgagagttggcatctgttccatcatttgttgaacttaccacagaacaa
agcgaaactgttggaaagttggctttagaaaggataattgaatcagatagacatgtctgc
gggtttgattgtaacaagatacgcatgccattgattgcccgatttattgctaaaatcgat
gctggcaatgatgttgcagccatactaagagagcatattagtgtggatcatcgggaattc
aaggggcatgaacttgttttacatattttgtaccatctgcattctatggcgaatctggac
acagatgaaacctcttcctatgctgctatgtatgaaaattttctcataacagtggcaaga
tcatttctggatgctcttcctgcttccgacaagtctttcagcagactttttggagaagct
ccacatctacctgattctgccataaagctactggatgaactctgctccactcgtcatgat
ccaactggaagagaaatcagtgatagtgagcgtgttacccaagggcttggtgcggtttgg
agcttaattctagtgcgtccaaatgagcgaaaagcattcttagccatagcattgaattgt
tctgttcattccgaagaagacatccgtgcaaaagccattcgacttgtcacgaacaaactg
tatcaccttacatacatttcagagcatgttgagaaatttgcaacagatatgttgctgact
gctgtgaactctgaggcagatctctcacagactggttttattgcagaaggaattaaaaca
gaggctaaaagtcagataacaatcgactctccatcttctagaacctccgatactcactct
cagcaggatctacaaacttctcgtgatgtttctgttttatcatttgctgaagctcagaga
cttatttctctattctttgctctgtgtaaaaagaaacctagtgtcctacgacttgtcttt
gaagtttacgggaaagctccaaaaacagtagtccaggcttttcatcgacatatacctatc
ttgatacgagaattaggttcatcttataaggaactgctccatataatatctgttcctcct
aagggaagtgaaaatttattgtcattggtactgcaaatattgacacaagaattggcacct
tcatcggatttgattactactgtaaagcatctatatgaaacgaagctaaaggatgtttca
attcttatcccattgctttcttcactcactaaagacgaggttctgcctatctttcccccg
cttcttaatcttccacctgagaagttccaacttgcactagctcatatattacagggttct
gctcacaccggccctgccctcacacctgccgaggtactgattgctatccacgatgttgtt
cctgagaagaatgggccacactgaaagataacagatgcatgttcagcttgctttgaacaa
cgcactgttttcacgcagcaagtcttagcaaaggctctcggtcagatggttgatcgaaca
cctctgcctttgctcttcatgagaacagtaattcaggcagtcgatgcttttcctacactg
gttgacgttgtcatggaaatcctttccaagttggtgagtaggcagatctggagactgcca
aaactgtggcctggcttcttgaaatgtgtgtctcagacacagccacattcattccctgtc
ttgttggagttgccaatgcctcaactcgaaagtatcatgaagaagtttcctgatctaaga
ccttctcttgctacttatgcgaatcagccaactatcagagcttctataccaaatccagct
ctttcagttcttgggcttgaaaatgggcaagattcacgttcgcaaatgcacccttcagat
gcagcttcttctattcatggggcagccttaacgtga
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integrated database retrieval system
