Brassica oleracea (wild cabbage): 106335516
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Entry
106335516 CDS
T04124
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site) lyase, chloroplastic-like
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
106335516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
boe03400
]
106335516
Enzymes [BR:
boe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
106335516
DNA repair and recombination proteins [BR:
boe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
106335516
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
106335516
NCBI-ProteinID:
XP_013629511
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Position
C3:<13878678..13881320
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AA seq
549 aa
AA seq
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MWHVPPLSMNKVLQFGLHSSKFLAVPLRRSLRFGSSTVSVRVVGATSFNKRLMSNATTPF
SINNNTKGKEMMKVAAATDQNCHQTVGSKVVIDCXGFLDDQKEIEAMTVQKLRATLRKLG
LPVKGLKQELISALQLHMDSNLQGDESSGAEIKETTSSTLSESVTIKRKIRNKEESTEDD
CNSSEAYGEKRVKQSTEKKLKAKVSSKAILSEHKSLTKAGKQKSRLKEEEASLTISSKVL
KTDEIISSSVQSEPWTVLAHKKPEKDXKAYNPKTMRPPPLPEGTKSVKIMTWNVNGLRAL
LKLESFSALQLAQRENFDVLCLQETKIQVKDVEEVKKALSDGYDHSFWSCSVSKLDYSGT
AIISRIKPLSVRYGTGHSGSDHDIEGRIVTTEFDSFYLISTYVPNSGDGLKRLSYRIEEW
DRTLSKYIKELEKTKPVVLTGDLNCAHEEIDIYNPAGNKRSAGFTIEERQSFRENFLDKG
LVDTFRKQHPGVVGYTYWGYRHGTRKTNKGWRLDYFLVSESISANVHDSYILPDINGSDH
CPIGLILKL
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgtggcatgtgccccctttatcgatgaacaaggttcttcagttcggtctccacagctcc
aagtttctggcggtgccgcttaggagaagcttaagatttggttcatcgactgttagtgtt
agagtagtaggagcaacaagtttcaacaagagactcatgtcaaatgctactacgcctttc
tctatcaacaacaacaccaagggaaaggaaatgatgaaggtagcagcagctactgatcag
aattgtcatcagacagttggttcaaaggttgtaattgattgctaaggatttttggatgat
caaaaggaaattgaggccatgacggttcaaaaacttagagccacgctgaggaaacttgga
ttacctgtgaaaggactcaaacaagaacttatctcagctttacaacttcatatggacagc
aatttacaaggtgatgaaagttctggtgcagaaataaaggaaactacttcatccaccctc
tcagaaagtgtcaccatcaaaagaaagatcagaaacaaggaagagtctacagaagatgac
tgcaatagctctgaagcttatggagaaaaaagagtaaaacagtctactgagaaaaaattg
aaagccaaagtttcttcaaaagctatcttaagtgaacacaagtcattaaccaaagcaggt
aagcagaagtctcggttaaaagaggaagaagcatcattgaccatatctagcaaagtcctc
aaaaccgatgaaatcatctcatcctcagttcaaagtgaaccatggacggtacttgcacat
aagaagcctgaaaaagacnntaaagcttataacccaaagacaatgagacctccccctctc
ccagagggaaccaagtctgtgaagattatgacttggaatgttaatggattgcgagcactg
ttgaagctagagagcttctctgctctgcagcttgctcagagagaaaactttgatgtcttg
tgcttgcaagagacaaagatccaggtgaaggatgttgaggaagttaaaaaagctcttagt
gatggctatgatcatagtttctggtcttgtagcgtctcaaagcttgactactctggaact
gctattatttcaaggataaaaccactctcagttagatatggtactggtcactctggatca
gatcatgacattgaaggacgcattgtgaccactgagttcgactctttctacttgataagc
acatatgtccctaactctggagatggcttaaaaagactgtcatacaggattgaagaatgg
gatcgaaccctcagcaagtacatcaaagagctggagaagactaaacctgtagtcttgact
ggtgatctaaactgtgctcatgaagaaatcgacatctacaatcctgcggggaacaaaaga
agtgctggttttacaatagaggaaagacaatcctttagagaaaacttcttagacaagggc
cttgtagatacctttagaaaacaacatcccggtgttgtaggttacacttattggggttat
cgccatggtactcgcaaaaccaacaaaggatggagactggactacttcttggtatctgaa
tcgatctcagccaatgttcatgattcttatattctccctgatatcaatggcagtgatcat
tgccccattggtcttattctcaagctctga
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