Brassica oleracea (wild cabbage): 106335602
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Entry
106335602 CDS
T04124
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106335602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106335602
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106335602
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106335602
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
106335602
NCBI-ProteinID:
XP_013629623
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Position
C3:complement(4436111..4441647)
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AA seq
847 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRY
RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ
PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKSRPPRLTHLETSITRH
KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV
EGLEDLVTAGPLVKGTPLSMKSSVAASASQVRSISLPTHHQSSSQEKTDDTTLPDSNSDT
IPKTPPQKNGALHSAPSTPLGERPSFNAPVSSVPNAPVALSTSIPVQTSTESMGSLSPVA
AKEEDATTLPSRKPTSSVADAPPRGIGRVNIPTQPQLSQPLSPSPANGARVSATSAAEVA
KRNIMGVESNVQPLTSPLSKMVLPPAAKGNDGTVSDSNPGDVGASIGRAYSPSIVSGSQW
RPGSPFQSQNETVRGRTEIAPDQREKFLQRYQQVQQGHGNLLGMASLSGGNEKQFSSQQQ
NPLLQQSSAISTHGGSGIQAPGFNVMSSASLQHSSNAMSQQFGQQPSVADVDHARNDEQL
QQNLPDDSTSIAASKTIPNEDDSKGLFDNPSGMPSYMLDQVQVTRDGPDFSPGQPIQPGQ
PSSSHGVIGRRSNSELGAIGDPSALGPMNDQMHNLQMLEAAFYRLPQPKDSERPRPYTPR
NPAITPQSFPQTQAPIVSNPLFWERLGSDAFGTEPLFFAFYYQQNSYQQYLAAKELKKQS
WRYHRKFNTWFQRHKEPTIATDEYEQGAYVYFDFQTPKDENRDGGWVQRIKNEFTFEYSY
LEDELAV
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcggaagctacaaggcgagatagatcgggtgctgaagaaggttcaagaa
ggtgtcgatgtcttcgacagcatctggaacaagtggaatgtatatgatacggataatgtt
aaccaaaaggaaaagtttgaggctgacttgaagaaggagatcaagaagctgcagcggtat
agggaccagatcaagacttggattcagtctagtgagatcaaagataaaaaagtcagtgca
tcatatgagcaatccctggttgacgctcggaagctcattgagcgagaaatggagaggttt
aaaatatgtgagaaagagaccaagacaaaagcattctctaaggaagggctgggtcagcaa
cctaaaactgacccaaaagagaaagcaaagtcagagacaagagattggttgaacaatgtg
gtgagcgaactcgagtcgcagattgatagctttgaagctgagttggaaggactatctgtc
aaaaaagggaagtcaaggccgcccagattgacacatcttgagacatctatcacaagacac
aaggatcacataataaagttggaattgatattaaggcttctggacaatgatgaattaagt
ccagaacaagtaaatgacgtcaaagattttctggatgattatgttgaacgaaatcaggat
gattttgacgaattcagtgatgttgatgagctctatagcacgttgccactagatgaggtg
gagggtcttgaagatctagttactgctggccccctcgtcaagggtactcctctgagcatg
aagagttctgtggcagcgtcagcatctcaagttcggagcataagtctgccaacacaccat
cagagtagttctcaagagaagactgacgatacaactttaccggatagcaattctgacaca
attccaaaaacccctccccaaaagaatggggcccttcactcagcaccatcaacacccctt
ggggaacgtccaagttttaatgcgcccgtcagtagtgttccaaatgcaccagttgcttta
tcaacttccattcctgttcagacttccacagaaagcatgggaagtttgtctccagtggcg
gccaaggaagaagatgcaacaaccttgccttcccgtaaaccaacctcatctgttgctgat
gctccaccgaggggcattggtagagttaatatccccacccagccccaactaagtcagcct
ttgtctccaagtccagctaacggagctcgcgtgagtgctacttcagcagctgaagttgca
aagagaaatataatgggagttgagagcaatgtccaacctctaacctctccgctcagcaaa
atggtattaccaccagctgcgaagggtaatgatggaactgtctctgatagtaaccctggt
gatgttggggcaagcatcggtagagcttattcaccgtctattgtatctggttcgcagtgg
aggcctgggagtccctttcagagtcagaatgaaacggtccgtggaagaactgaaatagca
ccagatcaaagggagaaattcttacagcggtaccagcaagtacaacaaggccatggtaac
ctcttaggcatggcttctctatccggaggaaacgagaagcagttttcttcgcaacagcaa
aatccgcttttacagcagagctctgccatctctactcatggtggctcgggaattcaggca
ccagggtttaatgtcatgagttctgcctccttacagcactcgtcaaatgccatgtctcaa
caatttggtcagcagccttctgttgcagatgtcgatcatgccagaaatgatgagcagctg
caacaaaacttacctgatgattcaacttccatagcagcttcaaaaactattccaaacgag
gatgattctaaaggtctatttgataatccgtcgggaatgcccagctacatgttggatcaa
gtacaggtaactagggacggccctgatttctctcctggacaacccatacaacccggccaa
ccttcaagtagccacggggtcataggacgtagaagtaactctgaactaggagctattggt
gacccttcagctttagggccaatgaacgatcagatgcacaatctccagatgcttgaagct
gctttctacagacttcctcaacccaaagattcagaacgtcctcgaccctatactccgagg
aacccagcaatcacacctcaatcatttccccaaacacaagcgccaatcgtaagcaaccct
ttgttctgggaacgtttaggcagcgatgcttttggaaccgagcctttgttctttgcattt
tactatcagcagaactcgtatcagcagtatctagcggcaaaagagctgaagaaacagtca
tggagataccacagaaagttcaacacatggtttcagagacacaaggagccaacgattgca
actgacgagtatgaacaaggagcctatgtatactttgatttccaaaccccaaaagacgag
aatcgagatggaggatgggttcaaaggatcaaaaacgagttcacgtttgaatacagttat
cttgaagatgaactcgccgtatag
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