Brassica oleracea (wild cabbage): 106335610
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Entry
106335610 CDS
T04124
Name
(RefSeq) SWI/SNF complex subunit SWI3A-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106335610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106335610
03036 Chromosome and associated proteins [BR:
boe03036
]
106335610
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
106335610
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106335610
PBAF complex
106335610
GBAF(ncBAF) complex
106335610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
VCIP135_N
DUF2532
Motif
Other DBs
NCBI-GeneID:
106335610
NCBI-ProteinID:
XP_013629637
LinkDB
All DBs
Position
C3:15971437..15973886
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AA seq
520 aa
AA seq
DB search
MEASTNDRSSSFKDAELELYTIPAHSSWFVWEDIHEIERREFAEFFSESSITRTPKVYKE
YRDFIINKYREDDSSRRLTFTSIRKHLVGDVNLLRKVFLFLENWGLINFLNKSDDGSMEE
SEAEIELGTPAGIRVTATPVSMRPVTVPPLVEERAEPAFKFSPLTSYSDVFTDLNKPLLC
GHCGESSCDSAFYQHTKSLVTLCDKCGDCGENNSAHDFKLIAAAAWTEEETLLLLESVLK
HGDDWELITQSVSTKSRLDCISKLIELPFGEFLMGSSSGRLRSSIPTSEDENLSSPSNPL
EQMKADGLEQKETETREEKGDDHVVDEDEPPAKRKRVAMLSDGGDSSLMKQVAAMACKVG
PSVTTAAAKAAIAALCDEASCPKDTFETTCDFTDFAVDRADGDKGTSDMEEQQEDKEGPQ
DLPVALRMRASVATALGAAAAHAKILADQEEREMEQLAAIIIDQQLKKMKSKLKFLDHLE
LIMDAEEQVMEGVKETILQERISVLQFAFGSGITKRWDHT
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgagtaccaatgatagaagcagcagcttcaaagacgcagagcttgagctctac
accatccctgctcattccagttggttcgtatgggaggatattcacgaaatcgaaagacgc
gagtttgccgagttcttcagtgagagctccatcactcgaacccccaaggtctacaaggag
tacagagatttcatcatcaacaagtacagggaagacgactcttctcgcaggctcaccttc
accagcatccgcaagcacctcgtcggcgatgtcaatctgctccggaaagtgtttctcttt
ctcgagaactggggcttgatcaatttcctcaacaaaagtgatgatggttccatggaggag
agtgaagctgagatcgaactagggactcccgctgggattcgtgtcactgctactccggtt
tccatgaggcctgtcaccgtacctccccttgttgaggaaagagctgagcctgccttcaag
ttctccccactcacctcttattctgatgttttcactgacttgaataagccgttgctttgt
gggcattgtggagaaagtagctgtgattctgctttctatcaacataccaagagtcttgtc
actttatgcgacaagtgtggagactgtggggagaacaactccgcacatgatttcaagctg
attgctgcagctgcctggaccgaggaagagaccctcctcttgctagagtctgtgctcaaa
catggagacgattgggaactcattacccaaagtgtttctacaaagtctagacttgattgc
atttccaagctcattgagctccctttcggagagtttctgatgggatcttcctctggaaga
ctcagatcctctatccccacctccgaggatgaaaacctttcgtctccatctaatccttta
gaacagatgaaagctgacggtctagaacaaaaggaaacggagacgagagaagaaaaggga
gatgatcatgtcgtcgatgaagatgagcctccagcaaaaagaaaacgtgttgcaatgcta
tcagatggtggtgatagttcacttatgaaacaggtcgcagcaatggcatgcaaagttggt
ccatctgtcacaacagctgctgcaaaagctgcaatcgctgctctttgtgatgaagcctct
tgtccaaaagatactttcgaaacaacttgtgatttcacagattttgcggttgacagagct
gatggagacaaaggtacatcagatatggaggaacagcaagaagacaaagagggacctcag
gatctacctgtagctttaaggatgagagcgtcagtggcaacagctcttggagctgcggcg
gctcacgcaaaaatactggctgatcaagaagaaagagagatggaacagttagctgcgatt
ataatagaccaacagctgaagaagatgaagagcaagttgaagtttctggaccacttggaa
ttgataatggatgcggaagaacaagtaatggagggcgtaaaagaaacaattctccaagag
aggattagcgttttgcaattcgcgtttggtagcggtataacaaaacgctgggatcatacg
taa
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