Brassica oleracea (wild cabbage): 106335861
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Entry
106335861 CDS
T04124
Name
(RefSeq) putative cyclic nucleotide-gated ion channel 13 isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
106335861
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
boe04040
]
106335861
Ion channels [BR:
boe04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
106335861
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
106335861
NCBI-ProteinID:
XP_013629961
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Position
C3:complement(21344510..21349101)
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AA seq
721 aa
AA seq
DB search
MNSVLYDSGEEYQVLDFMGFGRDNRVRWFKEPSSTEYGYGRRARPSLNAVLNNVRRGFEK
GSDKIRTFKKPLSFNSHKNEEKRNATGTQKKNIINPQGSFLQNWNKTFLFASVIALAIDP
LFFYIPIVDGKKHCLNLHSSLEIAASVLRTFVDAFYIIHIVFQFRTAYVSPLSRVFGRGE
LVEDPKAIALKYLSSYFIIDVLSILPLPQLVVLAVIPNVEKPVSLLTKDYLITVIFAQYI
PRILRIYPLYSEVTRTSGIVTETAWAGAAWNLSLYMLASHVFGALWYLISVEREDRCWRE
ACEKRQGCELRFLYCDGNNNVINDYLTTSCPFINPDDITNSTTFNFGIFTDALKSGIVES
DDFWKKFFYCFWWGLRNLSALGQNLNTSKFVGEIIFAVLICISGLVLFALLIGNMQKYLE
STTVREEEMRVRKRDAEQWMAHRMLPEDLRKRIRRYEQYKWQETRGVEEENLLRNLPNDL
RRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLRPVLYTENSYAIREGDPVEEMLFVMR
GKLMSATTNGGRTGFFNAVYLNASDFCGEDLLTWALDPQSSSHFPISPRTVQALTEVEAF
ALAAEDLKLVASQFRRLHSKQLQHTFRFYSVQWRTWGASFIQAAWRRHCRRRLARSLTQE
EDQFRIAVAKRERRAASSSSLVATLYASRFASNALRNLRQHNTLPLLPPKPSEPDFGVDD
D
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaactctgttctttatgattcaggagaagagtaccaagtccttgactttatgggtttt
ggccgtgacaatcgtgtaaggtggttcaaagaaccatcatccacagagtatggttacgga
agaagagctagaccatctctaaacgcagtgttgaataatgtccgaagagggtttgagaaa
ggatcagacaagatcaggactttcaagaaacccttaagtttcaattcacataagaacgaa
gagaagagaaacgctactggtacacagaagaagaacatcataaacccacaaggctccttt
ctacagaactggaacaaaaccttcctcttcgcttccgtgatcgctctcgccattgatccc
ttgtttttctacattcccattgttgatggaaaaaagcattgcctcaacttgcactctagc
ctcgagatagcagctagcgtgcttcgaacgtttgtagatgccttctacattattcacatt
gtgtttcagtttaggacagcttatgtctctcctttgtcccgggttttcggtagaggcgag
ttggttgaagatcctaaagccattgctttaaagtatctctcctcttatttcatcatcgat
gttctctctatccttccactcccacagcttgtagtcttggctgttatcccgaatgtggaa
aaacctgtctctttgctcactaaggactacctgataactgtcatatttgctcagtacatt
ccaaggattcttcgtatttacccgctttacagtgaagttacaagaacatctggcatagtt
actgaaacagcttgggctggagctgcttggaacctctctctctacatgttagccagtcat
gtgtttggagctttgtggtacttaatatcagttgaacgagaagacagatgctggcgtgaa
gcttgtgagaagagacaagggtgtgagttgaggtttctctactgcgatggaaacaacaat
gttataaatgattacctgactacttcgtgtccgtttatcaaccctgatgatataacgaat
tcaactactttcaactttggtatcttcactgatgctctcaagagtgggattgttgaatca
gatgatttctggaagaagttcttctactgcttctggtggggtctgcgtaatctaagtgca
ctgggacaaaacctcaacacaagcaagttcgttggagaaattatctttgctgtattaatt
tgcatatctggactagttctattcgcactacttatcggcaatatgcagaaatacttggag
tcgacaacagttagggaagaggagatgagagtgagaaaaagagatgcagagcaatggatg
gctcatcggatgttaccagaggacctaaggaaacgtatcagaaggtatgaacaatacaaa
tggcaagaaaccagaggagttgaagaagaaaaccttctgcgtaacctccctaatgacctc
agaagagacattaaacgccatttctgcctcgatcttctcaagaaagtacctctgttcgag
ataatggatgagcagctcctagatgccgtgtgtgacaagctaagaccagtgctctacact
gagaatagctacgcgattagggaaggagacccagtggaggagatgttgtttgttatgaga
ggtaagcttatgagcgccaccacgaacggtggccggacgggattcttcaacgccgtgtac
ctcaatgctagcgacttttgcggcgaggatcttctcacgtgggcgttggatcctcagtct
tcgtctcattttccaatctcgccgagaacagttcaagctctgactgaagtagaagccttt
gctcttgcagcagaagatctcaagcttgtcgcctcgcagttcagacggctacatagcaaa
cagcttcaacatactttcaggttttattcggtacaatggaggacatggggagcgtcgttt
atacaagcggcgtggcggagacattgtcggagaagattggctaggtcattaacgcaggaa
gaagatcaattccgaatcgcggttgcaaaacgcgaacgcagagccgcgtcgtcgtcgagc
cttgttgcgacgttatacgcgtcgcggttcgcgtcaaacgcgcttcgcaatctgcgtcag
cacaatacactgcctttgcttcctccgaagccatcagagcctgatttcggtgttgatgat
gattga
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