Brassica oleracea (wild cabbage): 106336098
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Entry
106336098 CDS
T04124
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106336098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106336098
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106336098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Vps36-NZF-N
Motif
Other DBs
NCBI-GeneID:
106336098
NCBI-ProteinID:
XP_013630276
UniProt:
A0A0D3B0J0
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Position
C3:2312922..2316131
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AA seq
626 aa
AA seq
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MPRKGFSNFDDYDDGFDDEDAYDYDYDDDDEHEEAEHKEVEIAWRCGICTYDNDESMNAC
DICGAIRLDPVAGGNQTINNNTASMKQKERQYLSEQNPVKKERDRSETSSQGRSNANVGC
IKSGKSLPKPKADTSHETNSSSKNMEASESLTGSMNKMSLTRETETSRDVKIRSARSKSN
HKPEEWMLLDKESDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKFEKEAKLL
GKGSFAYAWALDESAEERERGITMTVAVAYFNTKRHHVVLLDSPGHKDFVPNMIAGATQA
DAAILVVDASIGAFEAGFDNLKGQTREHARVLRGFGVEQVIVAVNKMDIVGYSKDRFDLI
RQHVGSFLQSCRFKESSLTWVPLSAMENQNLVSAPSESRLSSWYQGPCLLDAVDSVNSPG
RDVSKPLLMPICDVVRSNSHGQVSACGKLEAGAVRSGSKVIVMPSGEQGTVRSLERDSQG
CTIARAGDNVAIALQGIDANQVMAGGVLCHPDYPVSVATHLELMVLVLEGATPILLGSQL
EFHVHHAKEAATVVKLVAMLDPKTGEPTKKSPRCLTAKQSAMLEVSLHYPVCVETFSESR
ALGRVFLRSSGRTVAMGKVTRIIQDS
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgccccgtaaaggattctccaatttcgatgattacgatgatggtttcgacgatgaagat
gcgtatgattatgactatgatgatgatgatgaacatgaagaagctgaacataaggaagtg
gaaatagcttggagatgtggaatctgtacatatgacaatgatgagagtatgaatgcgtgt
gatatctgcggtgctattcgtcttgacccagtggctggtggaaaccaaaccatcaataac
aatacagcaagcatgaagcagaaagagaggcaatatttgtcagaacagaatcctgtaaag
aaagaaagagatagatcagaaactagctctcaaggtagaagcaacgctaatgttggctgc
ataaaatctggcaaaagtttgccaaaaccaaaagcagatacgtctcatgagacaaactct
tcctcaaaaaacatggaggcgtcagagagtctaactggtagtatgaacaagatgtctttg
actagggaaacagaaacctccagagatgttaaaatcagaagtgcaagatcaaaatcaaac
cataagccagaggagtggatgcttcttgataaagaatcagatacactaactcaacttaac
cttgccatagttggacatgttgattccggcaaatcaacgctttcaggtagactactgcat
ctactaggaagaatatctcaaaaacaaatgcacaagtttgagaaagaagcaaagttgctg
ggcaaggggtcctttgcatatgcctgggcactggacgagagtgctgaagagagggaaaga
ggaataacaatgacggtggctgttgcttacttcaacaccaaaagacaccatgttgttttg
ctggactctcccggacacaaagactttgtccccaacatgatagcaggagcaacgcaagcg
gatgcggcgatcctcgtcgtggatgcatctatcggtgcctttgaagctggttttgataac
ttgaaaggccagacgagggagcatgcgcgtgttcttagaggctttggcgtggagcaagtc
atagttgcagtcaacaaaatggatattgttgggtattccaaggacaggtttgatttgatt
aggcagcatgttggatcttttcttcagtcgtgtcggtttaaagagtcgtctctgacgtgg
gttcctttaagtgccatggagaaccaaaatttggtttctgctccctctgaaagccgccta
tcctcatggtaccaaggtccatgtttattggatgccgttgactctgttaactctcctggt
agagacgtctcaaagcctctgctcatgcctatatgtgacgttgtgagatcaaactcacat
gggcaggtttctgcgtgtggcaaacttgaagctggagctgttcgttcaggatccaaggta
atagttatgccatcgggagagcaaggaaccgtgcggtctttggagcgtgactctcagggt
tgcaccatcgcaagagctggagataacgtagcaatagctttgcaagggatcgatgcaaat
caagtgatggcaggaggtgtgctgtgccatcctgattacccagtttcagtagcaactcat
ttggagttgatggtgctcgtcttggaaggtgcgacaccgatcttactcggttctcagttg
gagtttcatgtgcaccatgcaaaggaagcagcaacagttgtgaagcttgtggcaatgctt
gatcccaaaacaggggagccgacaaagaagtctcctcgttgtctaactgctaaacaaagt
gcaatgcttgaggtgagtcttcattatccagtctgtgtggagacattttctgaaagtaga
gctcttggaagagtgttccttagatcatcaggaagaacagtcgcaatgggcaaagttact
cggatcatccaagactcataa
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