KEGG   Brassica oleracea (wild cabbage): 106336098
Entry
106336098         CDS       T04124                                 
Name
(RefSeq) HBS1-like protein
  KO
K14416  elongation factor 1 alpha-like protein
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    106336098
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106336098
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     106336098
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 GTP_EFTU_D2 MMR_HSR1 GTP_EFTU_D4 Zn_ribbon_RanBP Vps36-NZF-N
Other DBs
NCBI-GeneID: 106336098
NCBI-ProteinID: XP_013630276
UniProt: A0A0D3B0J0
LinkDB
Position
C3:2312922..2316131
AA seq 626 aa
MPRKGFSNFDDYDDGFDDEDAYDYDYDDDDEHEEAEHKEVEIAWRCGICTYDNDESMNAC
DICGAIRLDPVAGGNQTINNNTASMKQKERQYLSEQNPVKKERDRSETSSQGRSNANVGC
IKSGKSLPKPKADTSHETNSSSKNMEASESLTGSMNKMSLTRETETSRDVKIRSARSKSN
HKPEEWMLLDKESDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKFEKEAKLL
GKGSFAYAWALDESAEERERGITMTVAVAYFNTKRHHVVLLDSPGHKDFVPNMIAGATQA
DAAILVVDASIGAFEAGFDNLKGQTREHARVLRGFGVEQVIVAVNKMDIVGYSKDRFDLI
RQHVGSFLQSCRFKESSLTWVPLSAMENQNLVSAPSESRLSSWYQGPCLLDAVDSVNSPG
RDVSKPLLMPICDVVRSNSHGQVSACGKLEAGAVRSGSKVIVMPSGEQGTVRSLERDSQG
CTIARAGDNVAIALQGIDANQVMAGGVLCHPDYPVSVATHLELMVLVLEGATPILLGSQL
EFHVHHAKEAATVVKLVAMLDPKTGEPTKKSPRCLTAKQSAMLEVSLHYPVCVETFSESR
ALGRVFLRSSGRTVAMGKVTRIIQDS
NT seq 1881 nt   +upstreamnt  +downstreamnt
atgccccgtaaaggattctccaatttcgatgattacgatgatggtttcgacgatgaagat
gcgtatgattatgactatgatgatgatgatgaacatgaagaagctgaacataaggaagtg
gaaatagcttggagatgtggaatctgtacatatgacaatgatgagagtatgaatgcgtgt
gatatctgcggtgctattcgtcttgacccagtggctggtggaaaccaaaccatcaataac
aatacagcaagcatgaagcagaaagagaggcaatatttgtcagaacagaatcctgtaaag
aaagaaagagatagatcagaaactagctctcaaggtagaagcaacgctaatgttggctgc
ataaaatctggcaaaagtttgccaaaaccaaaagcagatacgtctcatgagacaaactct
tcctcaaaaaacatggaggcgtcagagagtctaactggtagtatgaacaagatgtctttg
actagggaaacagaaacctccagagatgttaaaatcagaagtgcaagatcaaaatcaaac
cataagccagaggagtggatgcttcttgataaagaatcagatacactaactcaacttaac
cttgccatagttggacatgttgattccggcaaatcaacgctttcaggtagactactgcat
ctactaggaagaatatctcaaaaacaaatgcacaagtttgagaaagaagcaaagttgctg
ggcaaggggtcctttgcatatgcctgggcactggacgagagtgctgaagagagggaaaga
ggaataacaatgacggtggctgttgcttacttcaacaccaaaagacaccatgttgttttg
ctggactctcccggacacaaagactttgtccccaacatgatagcaggagcaacgcaagcg
gatgcggcgatcctcgtcgtggatgcatctatcggtgcctttgaagctggttttgataac
ttgaaaggccagacgagggagcatgcgcgtgttcttagaggctttggcgtggagcaagtc
atagttgcagtcaacaaaatggatattgttgggtattccaaggacaggtttgatttgatt
aggcagcatgttggatcttttcttcagtcgtgtcggtttaaagagtcgtctctgacgtgg
gttcctttaagtgccatggagaaccaaaatttggtttctgctccctctgaaagccgccta
tcctcatggtaccaaggtccatgtttattggatgccgttgactctgttaactctcctggt
agagacgtctcaaagcctctgctcatgcctatatgtgacgttgtgagatcaaactcacat
gggcaggtttctgcgtgtggcaaacttgaagctggagctgttcgttcaggatccaaggta
atagttatgccatcgggagagcaaggaaccgtgcggtctttggagcgtgactctcagggt
tgcaccatcgcaagagctggagataacgtagcaatagctttgcaagggatcgatgcaaat
caagtgatggcaggaggtgtgctgtgccatcctgattacccagtttcagtagcaactcat
ttggagttgatggtgctcgtcttggaaggtgcgacaccgatcttactcggttctcagttg
gagtttcatgtgcaccatgcaaaggaagcagcaacagttgtgaagcttgtggcaatgctt
gatcccaaaacaggggagccgacaaagaagtctcctcgttgtctaactgctaaacaaagt
gcaatgcttgaggtgagtcttcattatccagtctgtgtggagacattttctgaaagtaga
gctcttggaagagtgttccttagatcatcaggaagaacagtcgcaatgggcaaagttact
cggatcatccaagactcataa

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