Brassica oleracea (wild cabbage): 106336108
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Entry
106336108 CDS
T04124
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03013
Nucleocytoplasmic transport
boe03015
mRNA surveillance pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106336108
09122 Translation
03013 Nucleocytoplasmic transport
106336108
03015 mRNA surveillance pathway
106336108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106336108
03041 Spliceosome [BR:
boe03041
]
106336108
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106336108
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106336108
Spliceosome [BR:
boe03041
]
Complex C
Other components
EJC/TREX
106336108
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106336108
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
106336108
NCBI-ProteinID:
XP_013630288
UniProt:
A0A0D3B0L0
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All DBs
Position
C3:complement(2450157..2453848)
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AA seq
427 aa
AA seq
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MGDARDNEAYEEELLDYEEEDEKVLDSGNKVNGDAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTPGQVSALIL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNNKIHKELLKNECPHIVVGTPGRVLGL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AGELNKLLIECNFPSICIHSGMSQEERLTHYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQDRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgctagggacaacgaagcctatgaggaggagctccttgattatgaggaagag
gacgagaaggttctcgattctgggaataaagttaacggcgacgctgtgaagaaaggttac
gttgggatacacagttcaggattcagagacttccttttgaaaccggagcttctccgagct
attgttgactctggatttgagcatccatctgaagtgcaacatgagtgtatccctcaagct
atcttgggcatggatgttatctgccaagctaagtctggtatggggaagactgctgtgttt
gtgctttcgactctgcaacagatcgagccgactcctggccaggtgtctgcacttatccta
tgccatacaagagagttagcataccagatctgcaatgagtttgtgcgattcagtacctac
ctgcctgatacaaaggtttcagtgttctatggaggagtcaacaacaaaattcacaaagaa
ctgctgaagaatgaatgtcctcacattgttgttggaacacctggtcgagttcttggactc
gccagggacaaagatctctctttgaagaatgtgaggcattttattcttgacgagtgtgat
aaaatgctcgagtcactagacatgcggagggatgtgcaggagattttcaagatgactccc
cacgacaaacaagttatgatgttctcagcaacgctcagcaaagagatacgccctgtctgc
aagaaatttatgcaagatccaatggagatttatgttgatgatgaagccaaattgactctt
catggacttgtccagcactacatcaaactgagcgagatggagaaaaaccgcaagttgaat
gatcttcttgacgcattggacttcaatcaagttgtcatatttgtgaagagcgttagcaga
gctggggagctgaacaagttgcttatcgagtgcaatttcccctcaatatgcattcactcc
ggcatgtctcaggaagagaggctgactcactacaaaagtttcaaggaagggcacaagaga
attctggtggcgacagacttggtagggagaggaattgacattgagcgtgtcaacattgtc
atcaactacgacatgccagattctgctgatacatatcttcacagggttggtagagctgga
aggtttggaacaaagggtcttgcaataacattcgtggcatcagcttctgattcggaagtt
ctcaaccaggtacaagataggtttgaggttgatataaaggaacttcctgagcagattgat
acgtcgacttacatgccgtcctaa
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