KEGG   Brassica oleracea (wild cabbage): 106336355
Entry
106336355         CDS       T04124                                 
Name
(RefSeq) DNA damage-binding protein 1b
  KO
K10610  DNA damage-binding protein 1
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03420  Nucleotide excision repair
boe04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    106336355
  09124 Replication and repair
   03420 Nucleotide excision repair
    106336355
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:boe04121]
    106336355
   03400 DNA repair and recombination proteins [BR:boe03400]
    106336355
Ubiquitin system [BR:boe04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     106336355
DNA repair and recombination proteins [BR:boe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      106336355
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      106336355
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd Beta-prop_RSE1_1st CPSF_A
Other DBs
NCBI-GeneID: 106336355
NCBI-ProteinID: XP_013630620
LinkDB
Position
C3:57576221..57582604
AA seq 1088 aa
MSVWNYVVTAQKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLEAILDVPLYG
RIATLELFRPHGETQDFLFIATEGYKFCVLQWDSDSSELTTRAMGDVSDRIGRQTDNGQI
GIIDPDCRFIGLHLYDGLFKVVPFDNKGQLKEAYNIRLEELQVLDIKFLYGCAKPTIAVL
YQDNKDARHVKTYEVSQKEKDFVEGPWSQNNLDNGADLLIPVPSPLCGVLIIGEETIVYC
SANALKAIPIRSSITKAYGRVDVDGSRYLLGDHAGLIHLLVITHEKEKVTGLKIELLGET
SIASTISYLDNAVVFIGSSYGDSQLIKLNMQPDANGSYVEIIEQYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELPGIKGIWSLKSSIDDAFDTFLVVS
FISETRILAMNIEDELEDTEIEGFLSQVQTLFCHDAVYNQLVQITSNSVRLVSSTTRELR
NKWDAPAGFTVNVATANASQVLLATGGGHLVYIEIGDGTLTEVKHAQLEYEVSCLDINPT
GDNPNYSQLAAVGMWTDISVRIFVLPDLTLFTKEQLGGEIIPRSVLLCALEGISYLLCAL
GDGHLLNFQLDTSTGELRDRKKVSLGTQPITLRTFSSKSATHVFAASDRPSVIYSNNKKL
IYSNVNLKEVSHMCPFNSGAFPDSLAIAREGELTIGTIDEIQKLHIRTIPIGEHARRICH
QEQTRTFAICSLRNQPSAEESEMHFVRLLDDRDFEFLATYPLDAFEYGCSILSCSFTDDK
NVYYCVGTSYVLPEENEPTKGRILVFVVEEGKLQLVAEKETKGSVYSLNAFNGKLLAAIN
QKIQLYKWTLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA
IEEIARDYNASWMTAVGILDDDTYLGADNCYNLFTVKRHSEAATDEERCRMEVVGEYHIG
EFVNRFRHGSLVTRLPDSETSQIPTMIFGTVNGVIGVMASLPQEQYAFLEKLQTSMRKVI
KGVGGLSHEQWRSFKNEKRSADARSFLDGDLIESFMDLSRRKMEEISKGMDVQVEELCKR
VEELTRLH
NT seq 3267 nt   +upstreamnt  +downstreamnt
atgagcgtatggaactacgtcgtcacggctcagaaaccaacctctgtcactcactcttgc
gtcggaaacttcaccagtccccaggagctcaatctcattgtcgcgaaatgcactcgcatc
gagatccatctgcttactccacagggacttgaggctatactggatgttcctctatatggg
agaatcgctactttggaattgttccgtccccatggtgaaacacaagattttttgttcatt
gcaactgagggatataaattctgtgttcttcagtgggattctgattcctccgagcttact
acaagggcaatgggggatgtctctgatcgtataggcagacagaccgacaatggtcagatt
ggtataattgatcctgattgcagattcattggtctccatctgtatgacggcttgtttaag
gtggttccatttgacaataaaggacagctcaaggaagcttataacataaggttggaggag
ttgcaggtcctggatatcaagtttctgtatggatgcgcaaagccaacaatcgcagtactt
tatcaggacaacaaagatgctcgtcatgtaaaaacatatgaagtttctcagaaggagaaa
gattttgtcgaaggaccatggtcacagaacaatcttgacaatggtgctgacctattgatc
cctgtgccttcacctctgtgtggggtccttatcattggagaagaaacaattgtgtattgt
agtgccaatgcactcaaagctataccaataagatcttccatcacaaaggcatatggaaga
gttgatgttgatggctctaggtatcttcttggtgaccatgccggactgatccacctcctt
gttataacccacgagaaagaaaaggtcactggcctcaaaattgagcttttgggtgaaaca
tcgattgcatctaccatctcctatcttgacaatgctgtcgtctttatcggctcaagctat
ggagattcacagcttataaagttaaacatgcagccggatgcaaacggttcatatgtagaa
attatagaacagtatgtcaacttggggcctattgtcgacttttgtgtagttgaccttgag
agacaggggcaaggtcaggttgtaacttgctctggagcatacaaggatggttctcttcgc
atagttcgtaatgggataggaataaatgaacaggcgtccgtggaacttccaggaatcaaa
ggaatatggtcgctgaaatcttcaattgatgacgcctttgatacattcctggtagttagt
ttcatcagtgaaactcgtatcttagccatgaacatagaggatgaactggaagacacagag
attgagggtttcttgtctcaagtccagactttattttgtcatgatgctgtctacaaccaa
cttgtacagattacttcaaattctgtgaggctagtcagttcgacaactagagaattgcgg
aataaatgggatgccccagctggattcactgttaatgttgcaactgcaaatgctagccag
gttcttttggcgactggaggtggacatttggtctatatagaaattggagatgggacattg
acggaagtcaaacatgcccagttggagtacgaggtttcttgtcttgatataaaccccact
ggggacaatcctaattacagtcagctagctgcggtggggatgtggacagatataagtgta
aggatttttgtgctgccggacttgactctattcactaaggagcaactaggaggagagata
attccccgatctgttcttctttgtgcattggaagggatatcttacttgctgtgtgctctt
ggagatggccatctattaaacttccagttggatacgagcactggggagttgagagatcgg
aaaaaagtatcgcttgggactcagcctataactctgcgtacgttttcatctaaaagtgca
acgcatgtcttcgctgcatcagatagaccgtctgttatatatagcaacaacaagaagctg
atatacagcaacgtgaatctgaaagaagttagtcacatgtgtcccttcaactctggtgct
tttccagacagcttagcgattgctagggaaggggaacttactattggtaccatcgatgag
attcagaagcttcacatacgcactattcccattggagagcacgctcgccgtatctgccat
caggaacaaacgcgaacatttgctatctgcagtttgagaaaccaaccgagtgcagaagaa
tctgagatgcattttgtccgtctgttggatgaccgagatttcgaattcttggcaacttac
cctttggatgcctttgaatacggttgctccatactgagctgctcttttaccgacgacaaa
aacgtttactattgtgtcggtacttcatatgttttgcctgaggagaacgaaccaacgaag
ggaaggatacttgtgtttgtagttgaagaaggaaagctgcagctggtagcagagaaggaa
actaaaggatctgtttattctcttaatgccttcaatggaaaacttctagctgctattaat
cagaaaattcagttgtataaatggacgttgcgggatgatggaactcgggagctccagtct
gaatgtggacatcacggtcacatactagctctctacgttcagacccgtggagacttcatc
gtcgttggtgacctcatgaagtcaatctccttattgatctacaagcacgaggaaggtgcg
atcgaggagatagctcgagactataatgcaagctggatgacggcagttgggatactagat
gatgacacgtacctcggtgctgacaattgctacaacttattcacagtgaagaggcacagt
gaagctgctacagatgaagaacggtgtcgcatggaggtggttggtgagtatcacattggg
gaatttgtgaaccgattccgccatggatctctggtcacgaggctgcctgattcagaaact
agtcagataccgactatgatctttggcactgtcaacggtgtgatcggagtgatggcttcg
ctgccgcaagaacaatatgcgtttctggagaaactgcagacgagtatgaggaaagtgatc
aaaggagttggcggtttgagccatgagcagtggagatcgttcaagaacgagaagagaagt
gcagatgcgaggagtttcttggatggggatttgatagaatcgttcatggatctgagcagg
aggaagatggaggagatatctaaagggatggatgtgcaagtggaagaattgtgtaagaga
gttgaggaactcacaaggcttcactga

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