KEGG   Brassica oleracea (wild cabbage): 106336443
Entry
106336443         CDS       T04124                                 
Name
(RefSeq) protein transport protein SEC13 homolog B
  KO
K14004  protein transport protein SEC13
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03013  Nucleocytoplasmic transport
boe04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    106336443
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    106336443
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106336443
   04131 Membrane trafficking [BR:boe04131]
    106336443
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     106336443
Membrane trafficking [BR:boe04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    106336443
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    106336443
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    106336443
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_Prp19 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WD40_Gbeta Beta-prop_WDR3_2nd WDR55 ANAPC4_WD40 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_IFT140_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR41 Beta-prop_SCAP WD40_RFWD3 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 106336443
NCBI-ProteinID: XP_013630731
UniProt: A0A0D3B449
LinkDB
Position
C3:9027658..9029878
AA seq 301 aa
MPGQKIETGHEDMVHDVQMDYYGKRVATASSDCTIKITGVSNNGGSQHLATLTGHRGPVW
QVAWAHPKFGSFLASCSYDGQVILWKEGSQNQWTQAHVFTDHKSSVNSIAWAPHDLGLSL
ACGSSDGNISVFTGRADGGWDTTKIDQAHPVGVTSVSWAPATAPGALVSSGLLDPVYKLA
SGGCDNTVKVWKLSNGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVII
WTVGKEGEQWEGKVLKDFMTPVWRVSWSLTGNMLAVSDGNNNVTVWKEAVDGEWEQVTVM
E
NT seq 906 nt   +upstreamnt  +downstreamnt
atgccgggtcagaagattgaaacaggtcatgaggacatggtccatgatgtgcaaatggac
tactacggaaagcgagttgcaactgcctcatctgactgcaccatcaagataaccggcgtt
agcaacaacggtggatcccagcacctagctacattaaccggccaccgtggtcccgtctgg
caggtcgcgtgggcccaccctaagtttggatcattccttgcttcatgctcctatgacggt
caggtcatactctggaaagaaggcagccaaaaccagtggacccaagctcatgtcttcacg
gaccataaatcttcggtcaactccatcgcttgggctcctcatgacctcggactgtccttg
gcttgtgggtcatccgacggaaacatttcggtattcacaggccgtgctgatggtggttgg
gacacgacgaagatcgaccaagcgcatccggttggagtcacttctgtctcatgggcacca
gccactgcgcctggtgctcttgtcagctctggattgcttgatccggtttacaagctggct
tccggtgggtgtgataatactgtgaaagtgtggaagctctcaaatgggtcgtggaagatg
gattgctttccggctcttcagaagcatactgattgggttcgtgatgtggcttgggcaccg
aacttgggtctccctaagtccaccatagccagtggctcacaggatgggaaagtgatcata
tggacagtggggaaagaaggtgagcagtgggaaggtaaggttctgaaggactttatgacc
ccggtgtggcgggtatcgtggtcgttgacaggtaacatgttggctgtgtccgatgggaac
aacaacgtgacggtgtggaaagaggctgttgatggagagtgggaacaggtcaccgttatg
gaatga

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