Brassica oleracea (wild cabbage): 106336921
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Entry
106336921 CDS
T04124
Name
(RefSeq) crossover junction endonuclease EME1A-like
KO
K10882
crossover junction endonuclease EME1 [EC:3.1.22.-]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03440
Homologous recombination
boe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106336921
03460 Fanconi anemia pathway
106336921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
boe03400
]
106336921
DNA repair and recombination proteins [BR:
boe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
106336921
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Gene cluster
GFIT
Motif
Pfam:
ERCC4
EME1-MUS81_C
Motif
Other DBs
NCBI-GeneID:
106336921
NCBI-ProteinID:
XP_013631353
UniProt:
A0A0D3C123
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Position
C4:40106852..40110216
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AA seq
529 aa
AA seq
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MSYPIFISDDDATPPPPFPSNKRPRKNPPPTPTVETEASSSSPLLVDDDDDVTVVRCPLG
SAAGSSSRRREEILAGKGVISLDSDSEDTPGAGAETSNKYGPTIHVDSLQHPCRLEPLTS
DSDSDNSTDWLRGPSSQSSLPKVAIEVDSDQENEDVSVEKMSRQKQTSGSKSPSLSGNAL
PRKRLSKDERIRAAEEKKLRKEQEKLQRAASRAEEAEKRKLDKEMQKRGKGKLALKSIVA
EIDLQLVEGALGAPLITLFAEKGITYRVISNPIKSSIVWTMTTLPEDVSQKIPYVLLVHE
AEEFCNLVANERLLENVSRVRDQYPSYTVCYLTNKLISYVEKREKKDYNVGKSNGWKRPP
IDEVLAKLTTHYDRVHSRHCIDGPEVAAHVVGLTSSLASCHFRKKSSWLSVKAEGIVASM
DSVDKHLIKKSPWLKALIAIPKVQPRYAVAVGKKYPTMKSLLKVYMDPNKSEQEKELLLK
DLKLEGLTGKDANLGIVGSKRIYRVLMSRTGELKTDEVASQIYSPHDLD
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgagttatccgattttcatctccgacgatgatgctactcctccacctccattcccatcc
aacaagaggcctcgaaagaatcctcctcccacccctaccgtcgaaaccgaagcttcttct
tcttctcctctgctcgtcgacgacgacgatgacgtcaccgtcgtcagatgtccccttggt
tccgcagctggctcctcttcgcggcgccgtgaagaaattttagccggtaaaggagtgata
tctcttgactcggattctgaagacactcctggagctggagctgagacttcgaacaagtat
gggcccaccatacatgttgattctttgcagcatccttgtcgattggagcctcttaccagt
gattctgattctgataatagtactgattggttgcggggacccagttctcaatcttcactt
cccaaagttgctattgaggtcgattctgaccaagagaatgaagacgtaagtgttgagaaa
atgagtcgacaaaagcagacatccggctctaaaagtccatctctttctggtaacgcattg
ccaagaaagcggttgtcaaaggatgaaagaatccgtgccgcagaggaaaaaaagttaagg
aaagaacaagagaaattacagagagctgcctcgagagcagaagaagctgagaaaaggaag
ttggacaaggaaatgcagaaacggggaaaaggaaagttggcgcttaaatctatcgtcgct
gagattgatcttcagttggttgaaggagcccttggagcacctctgatcacactgttcgct
gagaaaggcattacgtaccgtgtaatctctaatccaatcaagagttctattgtgtggaca
atgacgacacttccagaggatgtttctcagaagattccatatgttttacttgtgcacgag
gctgaagaattttgcaatcttgttgcaaatgaaagacttctagaaaacgtctcgagagtt
cgggaccaatacccatcttatacagtgtgctacctcacaaataaattgatttcatacgtt
gaaaaaagggaaaagaaagattataacgtgggaaaatccaatggttggaagcgacctcct
attgatgaggtgcttgcaaagttaacaacgcactatgatagagtgcattccaggcattgt
atagatgggcctgaggtggctgcacatgttgttggtttaacgagcagtctggcctcttgc
cacttcaggaaaaagtcatcttggttatcagtaaaggctgaaggtattgtagcctccatg
gattctgttgacaagcatttgattaagaagagtccatggttaaaagcgttaatagcaata
ccaaaggtgcagccaagatacgcggtagcagtggggaagaaatatccaacaatgaagtct
cttcttaaggtgtatatggatcctaacaaatcggaacaagagaaggagttgcttctaaag
gacttgaaattagaagggttaacaggaaaagacgcaaacttaggaatagttggttctaag
cggatatatagagttctcatgtctaggactggagaacttaagactgatgaagtggcttca
cagatttattctccacacgacttggactag
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