KEGG   Brassica oleracea (wild cabbage): 106337731
Entry
106337731         CDS       T04124                                 
Name
(RefSeq) protein transport protein SEC13 homolog B-like
  KO
K14004  protein transport protein SEC13
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03013  Nucleocytoplasmic transport
boe04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    106337731
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    106337731
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106337731
   04131 Membrane trafficking [BR:boe04131]
    106337731
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     106337731
Membrane trafficking [BR:boe04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    106337731
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    106337731
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    106337731
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_Vps41 WDR55 ANAPC4_WD40 Beta-prop_EIPR1 EIF3I Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd DSE1_N WDR90_beta-prop_4th NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_DCAF12 WD40_RFWD3
Other DBs
NCBI-GeneID: 106337731
NCBI-ProteinID: XP_013632311
UniProt: A0A0D3BTN2
LinkDB
Position
C4
AA seq 302 aa
MPGQKIETGHEDTVHDVQMDYYGKRVATASSDCTIKITGVSNNGASQHLATLTGHRGPVW
EVAWAHPKFGSMLASCSYDGQVILWKEGSQNQWTQAHVFTDHKTSVNSIAWAPYELGLSL
ACGSSDGNISVFTGRGDGGWDTTKIDQAHPVGVTSVSWAPSTAPGALVSSGLLDPVYKLA
SGGCDNTVKVWKLSNGSWKMDCFPALQKHTDWVRGVAWAPNLGLPKSTIASGSQDGKVVI
WTVGKEGEQWEGKVLNDFKAPVWRVSWSLTGNLLAVSDGNNNVTVWKEAVDGEWQQVTAL
EP
NT seq 909 nt   +upstreamnt  +downstreamnt
atgccgggtcagaagattgaaacaggtcacgaggacaccgtccacgacgtgcaaatggat
tactacgggaagcgagtagccaccgcctcgtctgactgcaccatcaagatcaccggcgtc
agcaacaacggcgcatcccagcacctagctacactaacaggccaccgcggtcccgtctgg
gaggtcgcgtgggcccacccgaagttcgggtcaatgctagcctcatgctcctatgacggt
caagtcattctctggaaagaaggcagccaaaaccagtggacacaggcccacgtcttcacg
gaccacaaaacttcggtcaactccatcgcttgggctccttacgagctcgggctatccttg
gcctgcggttcatctgacggaaacatctcggtgttcacaggccgcggcgacggtggctgg
gacacgacgaagattgaccaagcgcatcctgtcggtgtcacttcggtctcgtgggccccg
tccactgcgcctggggctcttgtcagctccgggttgctcgaccccgtttacaagctggct
tctggtgggtgtgataatacggtgaaagtgtggaagctctctaacgggtcttggaagatg
gattgcttcccggctcttcagaagcacactgactgggtgcgtggtgtggcttgggcgccc
aacttgggtctccctaagtccaccatagctagtggctcgcaagatgggaaagtggttata
tggacggtggggaaagaaggtgagcagtgggaaggtaaggttctgaatgactttaaggct
ccggtgtggcgggtctcgtggtccttgactggtaacttgttggctgtgtctgatgggaac
aataatgtgacggtgtggaaagaggctgttgatggagaatggcaacaagtcaccgccctg
gagccgtag

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