Brassica oleracea (wild cabbage): 106338544
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Entry
106338544 CDS
T04124
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 11-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106338544
03041 Spliceosome [BR:
boe03041
]
106338544
03036 Chromosome and associated proteins [BR:
boe03036
]
106338544
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106338544
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106338544
mRNA cycle factors
Common to processing body (P body) and stress granule
106338544
Spliceosome [BR:
boe03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106338544
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
106338544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
LRR_6
Helicase_C
ResIII
LRR_NXF1-5
WC-rich
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
106338544
NCBI-ProteinID:
XP_013632953
LinkDB
All DBs
Position
C4:complement(27507222..27512344)
Genome browser
AA seq
647 aa
AA seq
DB search
MSASWADAADSDREVNPFGGDANQENTSIDFDDYEDTPIETSGEDVPPPVHAFADIDLGE
ALNLNIRRCKYVTPTPIQRHAIPILLAGMDLMACAQTGSGKTAAFCFPIISGIMRDQHGE
RPLGSRTVYPLALILSPSRELASQIHDKAKKFSYQTGVKVVVAYGGTPIDQQLMELEKGV
DILVATPGRLNELLERATVTMQMIKFLALDEADRMMDMGFEPQIRKIVEQMDMPPRGVRQ
TMLFSATFPRLVQRLASDFLSNYIFLAVGMVGSSPDLITLKVEYVHDSDKRSHLMALLHA
QRENGTGDEKSLTLVFVETKTGADSLENWLCMNEFPATSIHGDKTQQVRLIDRSLQYCTV
SVWESDSLFLQPRYRQVKHINLEFSQGIEGNHLQLVKSQCQNALLSLKCLNLNGCQKISD
GGIEAITSICPNLKAISIYWNVRVTDDCIRHLVNNCRTIIDLNLSGCKSITDKGMQLVAE
SYQDLESLNITRCVKITYDGLLHVLHKCSTLQTLNLYALSGFIDKAYKKISLLADLRFLD
LCGAQNLFDEGLTHMAKCIKLESLNLTWCVQITDSGVITIANSCTSLEFLSLFGIVGVTD
RCLETLSQTCSATLTTLDVNGCIGIKRRSREELLQMFPRLTCFKVHS
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcatcatgggcagatgctgctgactcagaccgtgaagtgaatccctttggaggc
gatgctaatcaggagaacactagcattgactttgacgactacgaagatactcccattgag
accagtggggaagacgtgcctcctcccgttcacgcatttgcagacatagatctcggggag
gcgttgaatctcaacatcaggaggtgcaagtacgtgacgccaacgccaatacagcgtcac
gccatccctatactgcttgccggaatggatttgatggcttgtgctcagacagggtctggt
aaaacggctgcgttttgctttccgatcattagtggaatcatgagagatcagcatggggag
agacctcttggttcgcggactgtttatcctcttgcactcatcctctcaccatcaagggag
ctagcaagccagatacatgataaagccaaaaaattctcctaccaaactggtgtgaaggtt
gttgttgcttatggaggaacacctattgaccagcagctcatggaactggagaagggagtt
gatatccttgtggcaacacctggccggttaaatgaattgctagagagagctacagtcaca
atgcagatgattaagtttttagctcttgatgaagcggacaggatgatggacatggggttt
gaaccacaaattagaaagattgttgaacagatggacatgcctccacgtggggtcagacag
acaatgttgtttagtgccacgtttccaaggcttgtacagagactagcatctgatttcctg
tcaaactacatattcttggctgtgggaatggttggttcaagccctgatttaatcacccta
aaggttgagtatgtccatgattctgacaagagaagccatctcatggccttgctacacgct
cagagagagaatggcaccggggacgagaagtcattgacattggtctttgtggagacaaag
acaggagctgacagtttggaaaattggttgtgcatgaatgagtttccagcaacctccatt
cacggcgataaaacacaacaggttcgtttgattgatagaagtcttcaatattgtactgtg
agtgtttgggaaagtgattcactgttcttgcagccaagatatcgtcaagtgaagcatatc
aatctcgagttctctcagggtattgaaggcaatcatcttcaacttgtgaaaagccagtgt
cagaatgctcttttaagcttaaaatgcttgaatctgaatgggtgccaaaagatatctgac
ggtggaatcgaagctataactagcatatgtcccaatctaaaagctatctctatctactgg
aatgtgagggtgactgatgattgcattagacatctagtgaacaattgcagaaccatcatt
gatttgaacctaagtggctgcaagagtataaccgacaaaggtatgcagctagtagctgaa
agttatcaagacttggagtcactgaatatcactaggtgtgttaagatcacatatgatgga
ttacttcatgtgctacataagtgttctactctccagaccttaaacctctatgctctttca
ggattcatagacaaagcctacaagaagatatcacttttggctgatctaaggttcttagat
ttatgtggtgctcagaatttatttgatgaggggcttactcatatggctaagtgcatcaag
ctagagtctctcaacttgacatggtgtgtgcagatcacagattcaggggttattacaatt
gctaatagttgtacctctctagaatttctcagcttgtttggaatagttggtgtgactgat
agatgtctggagactctctcgcagacctgctctgccacactcaccactcttgatgtcaat
ggctgcatcggtattaagagacgaagccgtgaagagttgcttcagatgtttcctcgtctg
acatgcttcaaagtacacagctaa
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