Brassica oleracea (wild cabbage): 106338745
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Entry
106338745 CDS
T04124
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Module
boe_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106338745
Enzymes [BR:
boe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106338745
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106338745
NCBI-ProteinID:
XP_013633102
UniProt:
A0A0D3BZC8
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Position
C4:complement(35230747..35233347)
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AA seq
399 aa
AA seq
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MEKFQCTIMFAYLLMSTTIFSSLPIQSHATKHFNVLSFGAKPNGIVDSATAFAKAWDAAC
SSTEAAVIYVSKGRYLVSPVRFSGESCKSLDIVFRIDGTLVGSGDYNFLGREETWFSFER
VTGVSVIGGSFDAKGPSLWACKASSNNSCPAGATTISFVESSRVKVKGLLSLNSQMFHIV
INRCRNVKINDIRIVADGKSPNTDGIHVQLSTDVEIRNASIKTGDDCISIGPGTKNLWVE
RVTCGPGHGISIGSLGKDREEEGVQNVTVKKTVFVGTDNGLRIKSWANPSSGFVQRVRFL
ESLMFNVKFPLIIDQHYCPHNINCPSQESGVRINDVIYQGIRGTSATKIAVKLDCSAKAP
CTRIRMKDISLRYANEAAQSSCVNVLGDALGLVKHQTCF
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggagaagttccaatgtacgattatgttcgcttatttacttatgtcaacaacaatcttc
tcgtctttgccaatacaatctcacgcgacaaaacacttcaatgtgctgagcttcggagct
aaacctaacggtattgttgactcagctacagcttttgccaaggcatgggatgcagcgtgt
agttcgacggaggctgcggttatatacgtatccaaaggacgatatcttgttagccctgtt
cgtttcagcggtgaaagttgcaagagccttgatattgttttcaggatcgatgggactctt
gttggttcgggggactataactttcttgggcgagaagaaacatggttcagctttgaaaga
gtcactggagtttctgttatcggtggttctttcgacgctaagggaccttcattgtgggct
tgcaaggcctcctccaacaacagctgtcccgctggtgctacgacaataagttttgtggag
tcaagtagagtcaaggtgaagggattattgtcattgaacagccaaatgttccacatcgtc
attaatcgatgccgtaatgttaagatcaacgatattcggatcgtggcggatggaaaaagc
ccgaacacagatggcattcatgtccaactatcaactgatgttgaaattcgtaacgcttcc
atcaaaactggtgacgactgtatctccattggccccggaaccaagaacttgtgggtcgaa
cgagtcacatgtggccctggtcatggaatcagcattgggagcttgggaaaagatagagaa
gaggaaggggtacaaaatgtgacggtgaagaaaacagtttttgtaggaacagacaatgga
ttaagaattaagtcatgggctaacccatcatccggttttgttcagagggttcgattctta
gagtctcttatgttcaatgtcaagtttcctctcatcattgaccaacactattgccctcat
aacataaactgtccttctcaggaatcaggagtgaggataaacgatgtgatatatcaaggc
ataagaggaacatcagctacaaaaattgcggtaaaattggattgcagtgctaaagctcca
tgcacacgtattagaatgaaggacattagtctgagatatgctaacgaagctgcacaatct
tcatgtgtcaatgtccttggagatgcacttggtttggtcaaacatcaaacctgcttctga
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