Brassica oleracea (wild cabbage): 106339332
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Entry
106339332 CDS
T04124
Name
(RefSeq) LOW QUALITY PROTEIN: spastin
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
boe04131
]
106339332
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
boe04812
]
106339332
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
106339332
Membrane trafficking [BR:
boe04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
106339332
Cytoskeleton proteins [BR:
boe04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
106339332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_5
Vps4_C
AAA_22
AAA_16
NPHP3_N
AAA_14
TIP49
Mg_chelatase
AAA_2
DUF815
RNA_helicase
IstB_IS21
nSTAND3
ABC_tran
AAA_25
AAA_24
DUF4368
AAA_33
NACHT
Motif
Other DBs
NCBI-GeneID:
106339332
NCBI-ProteinID:
XP_013633576
LinkDB
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Position
C4:complement(3901267..3903996)
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AA seq
492 aa
AA seq
DB search
MSFFRDIIDSFSSIFTEESNHDHTVSSSSSSGSSMNVIDGVPVSNERVAYKLKGYFDLAK
EEIAKGVRAEEWGLHNDALLHYRNAQRIMNEATSTPSPSYISSNEKEKVRSYREKISKWQ
SQVSERLQALGKRAGVGVSENKRTVPSSPSSASASSTASNRRVSTQRTSLPRGGVGKARS
PRDATTTNPKPAKESGNGYDDKLEEMINTTIVDRSPSVKWDDVAGLDGAKQALLEMVILP
AKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEK
LVKTLFQVAISRQPSVIFMDEIDSIMSTRSISENEASRRLKSEFLIQFDGVTSNPDDLVI
VIGATNKPQELDDAVLRRLVKRIYVPLPDSNVRKLLFKTKLKCQPHSLSGGDIDKIVRET
EGYSGSDLQALCEEAAMMPIRELGADILTIQANKVRPLRYDDFRKSMAVIRPSLSKGKWE
ELERWNSEFGSN
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcttcagagatataatcgattcgtttagctcaatcttcacggaagaatctaat
cacgatcataccgtatcatcatcttcttcatctggctcctccatgaacgttatcgatgga
gttccggttagtaacgaacgagttgcgtataagctcaaaggatacttcgatttggcgaaa
gaggagatcgccaaaggtgttagagcagaggagtggggtttacacaacgacgcgcttctt
cattacagaaacgctcagaggatcatgaacgaagctacctccactccttctccttcttac
atcagttccaatgagaaggagaaggtgagatcttacagagagaagatttctaaatggcaa
agtcaagtatctgagaggttgcaagctcttggtaagcgtgcaggtgttggagtgtctgag
aataagagaactgtaccatcatctccttcttcagcttcagcttcctcaacggcgtctaat
agaagagtttcaacacaaaggacttcacttcccagaggtggagttgggaaggcgaggagc
cctagagatgctactactacaaacccaaaacctgcgaaagaatctgggaatgggtacgat
gataagttagaagagatgatcaacacaacaatagtggacagaagcccatctgtgaagtgg
gatgatgttgctggacttgatggagccaaacaagctttactggagatggttattttacca
gcgaaacgaagagatttgttcactggtctccgaagaccagctagaggtttgcttctcttt
gggccacctggcaatggaaaaacaatgcttgccaaggcagttgcttccgagtcacaggca
acattcttcaacgtctcagcatcttcattgacatctaaatgggtgggcgaggctgagaag
ctagttaaaacgttgttccaagttgcaatatccagacaaccttctgttatatttatggat
gaaatagatagtataatgtctacaaggtcgatcagcgagaacgaagcgagcagaaggttg
aaatcagagttccttatccagtttgatggtgtgacttctaatcctgatgatttggtgatt
gtcatcggagctactaacaagccacaggagttggatgatgcagtgcttagaagattggta
aagagaatatatgtaccgttgccggattcaaacgtcaggaaactactttttaaaactaaa
ctgaagtgccagcctcactctttatctggtggagacattgataaaatcgtcagagaaacc
gaaggatactcaggaagtgatctacaagcattgtgtgaagaagctgcaatgatgccaatc
agagaactcggtgctgatattctcaccatccaagcaaataaagtgagaccgctgagatat
gatgattttaggaaatcgatggcagtgataagaccaagcttgagtaaaggcaaatgggaa
gagcttgaacgctggaactctgagtttggctctaattga
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