Brassica oleracea (wild cabbage): 106339926
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Entry
106339926 CDS
T04124
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106339926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
boe03400
]
106339926
DNA repair and recombination proteins [BR:
boe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
106339926
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_16
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
106339926
NCBI-ProteinID:
XP_013634249
UniProt:
A0A0D3C3W0
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Position
C4:complement(47751920..47755072)
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AA seq
799 aa
AA seq
DB search
MVGTDHSLPFSTARNLPWILRSESKRISQSELAKRPDPFFLPDLLDGFEESKYGWLADDV
KRLCELKRKLLNGSVSVEETETRQKKEKPDDVLSQESVTIGDCSGSESYNEEYSSKTPTD
DDNGTHLYGVGEEEEEAELWRQMAFAQESSKVTVENVQDNDPKQIEDCEHSFIHKDDVGE
VCRVCGLIKTPIENIIEVVYYKPKRSRRTYTREQEEDTETTRMDFTETHHSSSHTNNILG
DKMFIHPRHDNEMRPHQIEGFKFLCNNLASNEPGGCILAHAPGSGKTFLLISFLQSFMAM
DPQAKPLIVLPKGIIESWKREFTKWAVEDIPLYDLYSVKAESRRQQLKVLREWVEERSIL
FLGYQQFAKIICDDSINIDDEVSEDCKRILLEKPTLLILDEGHTSRNKETNLLISLARVR
TRRKVVLTGTLFQNNVEEVFNILNLVRPKFLKRHRETVSRIMSKAEIPSGKHMNQSSIEN
TFFAAVELTLSRESSAKASMIKDLREMTRHVLHYHKADFKGLLPGLSEFTVMLNLSPLQR
DEIKGLREMDLFKQISLGAALYIHPKLKAFLEANPSNGEKGFADNLLKKLDTLLKKINVK
DGAKMKFFLNLVSLCESTGEKLLVFSQYIIPLKTLERLMTLTKGWRVGKEMFTITGDSSS
GEREMSMERFNTSPDARVFFGSIKACGEGISLVGASRVLILDVHLNPSVTQQAVARAYRP
GQKRRVYAYRLVAADSPEEESYETCSRKEMMSKMWFEWNVGCGGGRDEFGFRDVDVDQSG
DVFLETTKMKEDIKSLYTR
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggtgggtactgatcactctctacccttctcaacggcgaggaacttgccttggattttg
aggtcggagagcaagaggattagccagtcagaactcgccaagcgtcctgacccgttcttt
ctaccggatctacttgatgggtttgaagagagcaaatacggttggcttgctgatgatgtg
aagaggctttgtgagctcaaaaggaaactcttgaacggttctgtctcagtggaagagaca
gaaactagacagaagaaggaaaaaccagatgatgtgttgtctcaagaatcagtaactatt
ggagattgctcaggatctgaaagttataacgaggagtattcatccaagactcctacagat
gatgacaatggaactcatctgtatggagtaggagaagaagaagaagaagcagaactttgg
aggcagatggcatttgctcaagaatcatctaaagtaacggtagagaatgtacaagacaac
gatcccaaacaaatcgaagactgtgagcactccttcatccacaaggatgacgttggagaa
gtctgccgtgtttgtggactcatcaaaacaccaatcgaaaacatcatcgaagttgtctac
tacaagcccaagagatcaagaagaacttacacacgggaacaagaagaagacacagaaaca
acgaggatggacttcacagaaacccaccactcttcttctcacaccaacaacatcttagga
gacaagatgttcatccacccaaggcacgacaacgagatgagaccccaccaaatcgaaggc
ttcaagttcctatgcaacaacctcgcatccaacgagccaggcgggtgcatcttagcacac
gcgccgggctcaggcaagacattcctcctcatcagcttcctccaaagcttcatggccatg
gatccgcaagccaaaccgctcatagtcctcccaaagggtatcatagagtcgtggaagaga
gagttcactaaatgggcggtggaggacatccctctctatgatctctacagcgtcaaagcc
gaatcaagaagacaacaactcaaggttctgagagaatgggttgaagagagaagcatactc
tttctcggttaccaacagttcgcaaagatcatatgcgatgatagcattaacatagatgat
gaagtgtcagaagattgtaaacgtattcttctcgagaagccgacgctgcttatcctcgac
gagggacacacgtcgaggaacaaagagacgaacctgcttatctcccttgctcgcgtcagg
actcgtaggaaagttgttctcacggggacattgtttcagaacaacgttgaggaagtgttt
aacattttaaacctagtccgtcccaagttcttgaagcgtcaccgagagactgtttcccgc
atcatgagcaaggcggagatacctagcggcaaacatatgaaccagagtagtattgaaaac
actttcttcgctgcggtggagcttacactgagtagagagagttcagctaaagcgagtatg
attaaggatctgcgcgagatgacacgtcacgtcttgcattatcacaaagcggacttcaag
ggattgcttccagggcttagtgagttcactgtgatgcttaacttgagtccccttcagaga
gatgaaatcaaaggccttagggagatggatctgttcaagcagatctctctcggtgctgct
ttgtacatacacccgaagcttaaagccttcttggaggcaaacccttcgaacggagaaaaa
ggtttcgctgataacttgctgaagaagctagataccttgctgaagaagattaacgttaaa
gacggcgccaagatgaagttcttcctcaacctcgtgtctctctgcgagtcaacgggtgag
aagctgttggtgttcagccaatacatcatccctctcaagactctcgagaggctcatgacc
ctgacgaaaggatggagggtggggaaagagatgttcaccatcacaggcgactcgagcagc
ggggagagagagatgtccatggagaggttcaacacctctccggacgctagagtgtttttc
ggatcgatcaaagcatgtggagaagggatctcattggtgggtgcgtcgagggtgctgatt
ctcgacgttcatctaaacccttcggtgactcagcaggctgtggctagagcttataggccg
ggacagaagaggagagtgtatgcgtacaggcttgtggctgcggattcgccggaggaggag
agctatgagacgtgttcgaggaaggagatgatgtctaagatgtggtttgagtggaacgtt
ggctgtggaggagggagagatgagtttgggtttagggacgtggatgttgatcagtctggt
gatgtgtttcttgagacgactaagatgaaggaagatatcaagagtttatatactaggtga
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