Brassica oleracea (wild cabbage): 106340539
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Entry
106340539 CDS
T04124
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Module
boe_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106340539
Enzymes [BR:
boe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106340539
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
106340539
NCBI-ProteinID:
XP_013634859
UniProt:
A0A0D3C657
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Position
C4:complement(52475328..52477319)
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AA seq
388 aa
AA seq
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MASLLVLFVFFFFISSCSAQSYNVLSFGAKPDGKTDATKEFMAVWKTACASSRPVTIVVP
KGRFLLRSLNFDGSKCKRKHITFRVDGTLVAPADYRVIGNEDYWILFQHLDGVTVYGYGG
VLDAQGTSLWGCKTSGKNCPRGATTIGFQSSRNVVVSGLTSLNSQMFHFVINGCNNVKLQ
GVKVLAAGNSPNTDGIHIQSSSTVSIFSTKISTGDDCVSIGPGTNGLWIENVACGPGHGI
SIGSLGKDAVESGVQNVTVKTVTFTGTQNGARIKSWPRPSSGFARNIRFQHCVMNNVDNP
IIIDQNYCPRNENCPRQVSGIKISDVLFVDIHGTSATEVGVRLNCSPKKPCTGIRLKDVK
LKYRNKPAASACVHAGGIEAGLFQPNCL
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacttcttgtcctcttcgtcttcttcttcttcatctcctcttgctctgctcaa
tcctacaatgtcttgtcctttggagctaaaccggacggaaagacagacgcaaccaaagag
tttatggcggtttggaaaaccgcttgtgcctcgtctcgtcccgtgaccattgtggttcct
aaaggccggttcttgttaaggagccttaatttcgacggttccaagtgcaagcgcaagcac
atcacgttccgtgtagacggtacattggtggctccggctgattatagagttatcggtaat
gaagattactggattcttttccagcatcttgacggagtcaccgtctacggctacggcgga
gttcttgacgctcaaggaacttctctatggggttgtaaaacatccggcaagaattgtcct
agaggagccacgaccatagggtttcagagctcaagaaacgttgtggtctccgggctgacg
tcactcaacagccagatgttccacttcgtcatcaacggttgcaacaacgtaaagcttcaa
ggagtcaaagtattagccgcaggaaacagccccaacacagacggtatccacattcagtct
tcctccaccgtctctatcttcagtaccaaaatttccaccggcgacgattgtgtctccatc
ggtcccggaaccaacggtctatggatcgaaaatgtagcatgtggtcccggtcacggcatc
agcattgggagcctgggaaaagatgcagtggagtcaggtgtacagaacgtgactgtgaaa
acggtgacgtttacggggacgcaaaacggagcgaggatcaaatcatggcccaggcccagt
agtggattcgctaggaacatccgctttcaacattgtgtaatgaacaacgtagacaacccc
ataattattgaccaaaactactgtcctcgtaacgaaaattgccctcgccaggtttcgggt
atcaaaatcagcgatgtgttgttcgttgatatacatggaacatcggcaactgaagttgga
gtgagacttaattgtagtcctaagaaaccgtgtaccggaattcgacttaaggatgtgaaa
ttaaagtaccgtaataaaccggctgcgtcggcttgtgttcatgccggagggatagaagct
ggattgtttcagccaaactgcctatga
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