Brassica oleracea (wild cabbage): 106340776
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Entry
106340776 CDS
T04124
Name
(RefSeq) LOW QUALITY PROTEIN: rhamnogalacturonate lyase B-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106340776
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106340776
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
106340776
NCBI-ProteinID:
XP_013635074
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Position
C4:complement(40754270..40767562)
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AA seq
677 aa
AA seq
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MKVGAPRKIRSWVVFQVLLLHLLPQAVHSQRSQNKLNITKPGENISSLTIQLRGVGNDKV
VVDNGIVQVTFSSPQGSITGIKYDGIDNVLDDEVDERRRGYWDVAWYEPEKKFKTDKLEG
TRFEIITQNEEQVEISFTRTWTISKRGSLVPLNVDKRYIIRSGVSGIYIYCIMERLEGWP
DVDMDQIRIVFKLNHTIFNFMAISDDRQRSMPSMADRNHAMQLAYKEAVLLTNPRNPMFK
GEVDDKYMYSMEDKDNNVHGWISSEPPVGFWMITPSDEFRLGGPIKQDLTSHAGPITLSM
FTSTHYAGKEMRMGYRNGEPWKKVFGPVLAYLNSVSPNASTLRLWRDAKRQMAEEVKSWP
FDFVHSENYPLSNQRGTIQGQFYIKDSYVSRLNIYGKFAFVGLAPVGXAGSWQTKSKGYQ
FWTKADRKGRFIIENVRAGNYSLYAWGIGFIGDYKYEQNITITPGSEMNVGPIVYEPPRN
GPTLWEIGVPDRTAGEFYIPDPYPTLMNNLYVNPLQDRFRQYGLWDRYSDLYPENDLVYT
IGLSNYRRDWFFAHVTRNVGNNTYQPTTWQIVFNLQNLNRVGLYTLRVALASAADSELQV
RINDPESDHIFTTGLIGKDNAIARHGIHGLYRLYSIDVAGNLLGAGDNTIYLTQSRSTTP
FQGVMYDYIRLESPFKT
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcggagctccgagaaagattcgtagttgggtcgtattccaagttcttcttctg
catctccttcctcaagctgttcattctcagagatcacaaaacaaacttaacatcacaaag
cctggagaaaacatatcatccctaacaatccagctaaggggagttggtaacgacaaggtg
gtcgttgataatggtattgttcaagttactttctcgagcccgcaaggttcgataactgga
atcaaatacgatggcatcgacaatgtattggacgacgaagttgacgaacgtcgccgtggg
tattgggacgtagcctggtatgaaccggaaaagaaatttaaaactgacaaactagaagga
actagatttgaaatcataactcagaacgaagaacaagttgagatttcatttacaaggacg
tggacgatctctaaacgtggctccttggtccccctaaatgtagacaaaaggtacattatt
cgaagtggtgtctccggaatatacatctactgtataatggagaggttagaaggctggccc
gacgtggacatggaccaaattagaatcgtattcaagctcaaccacacaatatttaatttc
atggcaatatctgatgaccggcagagaagcatgccgtccatggcagatcggaaccatgct
atgcaattagcttataaagaagctgttcttttgacaaatccaaggaaccctatgttcaaa
ggagaggtagacgataagtatatgtactcaatggaagacaaagataacaacgttcatggt
tggatctcgtcggagccaccggttgggttttggatgataactccaagcgatgagttccga
cttggtgggccgatcaagcaagacctgacttctcacgcgggaccaatcaccctctccatg
tttacgagcacgcactacgcgggaaaagagatgagaatgggctacagaaatggagaacca
tggaagaaggtgtttggacctgtgttggcttatctaaactctgtctctcccaatgcttcc
actcttcgtctatggagagatgccaaacgacagatggctgaagaggtcaaaagctggcct
tttgattttgtacattcagaaaattaccctcttagtaatcaaagaggaacaatccaaggg
cagttctatatcaaagatagttacgtgtcaaggttaaatatatatgggaaatttgctttt
gttggtttggcaccagttggttaagccggttcatggcaaaccaaatccaaggggtatcag
ttctggacgaaagctgacagaaaagggagattcattatagagaatgtgagggcaggcaac
tatagtctctacgcctggggtataggttttattggtgactacaaatatgagcaaaacatt
accatcacgccaggtagcgagatgaacgtagggcccatagtgtatgagccgccgagaaat
ggtccaacgttgtgggaaatcggtgtaccggaccgaacagccggagaattctatataccg
gatccttatcctacacttatgaacaacctctacgttaatccacttcaagacagattcagg
caatatggattatgggatcgttactcagatttatacccagaaaacgatcttgtctataca
atcggtctaagtaattacagaagagattggttctttgcacatgttaccagaaacgttgga
aacaatacataccaaccaacgacatggcaaatcgtattcaacttacagaatttgaaccgg
gtcggactctacacactccgagtagctctagcctcagccgctgattcagaactacaagtt
cggatcaacgatccagaatccgatcatatttttacgactggtttaatcggaaaagacaat
gcgattgcgagacatgggattcatgggttatatagattgtacagtatcgatgttgcggga
aacttactaggcgctggtgataacacgatatatttaactcaatcgagaagtacaacacca
tttcaaggtgttatgtatgattatattcgtcttgaaagtccttttaaaacttga
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