Brassica oleracea (wild cabbage): 106341611
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Entry
106341611 CDS
T04124
Name
(RefSeq) probable polygalacturonase At2g43860
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Module
boe_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106341611
Enzymes [BR:
boe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106341611
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
LysM3_LYK4_5
NosD
Motif
Other DBs
NCBI-GeneID:
106341611
NCBI-ProteinID:
XP_013635788
UniProt:
A0A0D3C651
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Position
C4:complement(52449191..52450670)
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AA seq
411 aa
AA seq
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MIHKTSCLLLLLPLTLIFFDFILISSLAKPTPITSLSVLTYGAKPDGSKDSTKAFLAAWQ
VACASPNPTTIIVPKGRFLVGNLVFQGTKCTNAPISFRIAGSIIAPKDFRVIANSLQWIM
FDGVTNVSIYGGVLDAQGSSLWKCKNSGGKKCPTGAKTLLFTDSNNISIYGLTSINSQKF
HIVIDQSNNVKIDGVKVSADADSPNTDGIHIKNSHSVNITNSRIGTGDDCISIGPGSTYV
SIQGIQCGPGHGISIGSLGRSEDEQGVENVMVSNVDFMSTDNGVRIKTWGKVSKSFVRNI
VFQHINMKMVKNPIIINQHYCLDKPCPKKESGVEISNVRYEDIQGTSNTEVAVMLDCSKD
KPCTDIVMGNVNLVLQMVNGSAQASCNNANGLANDVVVPFTPCLKRDLLLT
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgattcacaaaacatcatgtcttcttcttcttcttcctctgactctcatcttctttgat
ttcatcctaatctcatcattagccaaaccgaccccaatcacatccctcagtgtcttaacc
tacggagctaaaccagatggctcaaaagactcaaccaaagccttcttagccgcatggcaa
gtcgcatgtgcctctcctaatcccacaactattattgtaccaaaaggacggttcttggtc
ggaaaccttgtattccaaggcaccaagtgtacgaatgctccaatatcttttcgtatagcc
ggttcaattattgcaccgaaagattttagagttatcgcaaactcactacagtggatcatg
ttcgatggagtcactaacgtttcaatctacggtggtgtacttgacgcacaaggctctagt
ttgtggaaatgcaagaacagtggtggcaaaaaatgccctactggtgctaagactttgtta
tttactgattcgaataacatcagtatctacggtttaacttcgatcaatagccagaagttc
catatagttatcgaccagagcaataacgttaagattgacggcgttaaagtttctgctgat
gcggatagtcctaacaccgatgggattcacataaagaactctcactccgtgaatatcact
aactcgagaattggaaccggggacgattgcatctccatcggtccaggatccacttatgtt
tctatacaaggcattcaatgcggtccaggccatggcatcagtatcgggagtcttggtaga
tcagaggacgagcaaggagtggagaacgtgatggtgagtaacgtggatttcatgtcaact
gataacggagttaggatcaagacatggggaaaagttagcaagagtttcgtacgaaacatt
gttttccaacatattaatatgaagatggtcaagaacccgattatcataaaccaacactat
tgtcttgacaaaccttgccctaaaaaggaatctggagttgaaatatcaaatgtgagatat
gaagatatacaagggacatcgaatacggaagtggcggttatgttggattgtagtaaggat
aaaccatgtaccgatattgtaatgggtaatgtgaatctcgtcttgcaaatggttaatggg
tcggctcaggcttcttgcaacaatgcaaatggattagctaatgatgtcgttgtcccgttc
actccttgtctaaagagagacttgcttttgacatga
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