Brassica oleracea (wild cabbage): 106341835 Help Entry 106341835         CDS       T04124                                  Name (RefSeq) ATP-dependent RNA helicase DHX36   KO K14442   ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] Organism boe  Brassica oleracea (wild cabbage) Pathway boe03018   RNA degradation Brite KEGG Orthology (KO) [BR:boe00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     106341835  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:boe03019]     106341835    03012 Translation factors [BR:boe03012]     106341835 Enzymes [BR:boe01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      106341835 Messenger RNA biogenesis [BR:boe03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Other 3'-5' decay factors      106341835 Translation factors [BR:boe03012]  Eukaryotic type   Initiation factors    Initiation associated factors     106341835 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  OB_NTP_bind Helicase_C DEAD R3H HA2_C HA2_N AAA_22 Ank_5 nSTAND3 Ank_2 AAA_19 NPHP3_N ATPase AAA_7 DUF4038 T2SSE Sigma54_activat AAA_11 AAA_16 Ank_4 Motif Other DBs NCBI-GeneID:  106341835 NCBI-ProteinID:  XP_013636014 UniProt:  A0A0D3C369 LinkDB All DBs Position C4:complement(46057466..46063374) Genome browser AA seq 1300 aa AA seqDB search MGNKRFRSENAAGKPSSVEATRIWASKVIEDFRASGNEVYTFGHNLSNTERGVIHQMCRK MGIQSKSSGQGNQRRLSIFKDMYRNGKNKGAKEKSRNREKLRCVSFPPEADAILQELFTY YPPCDGDTAATSFNKYVGNSGKQGQWKDDFFRKPLMSGDEILDKVASLSSRLRSDRALQE ISKLRSRLPITSFRDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWASKRETCKIV CTQPRRISAMSVSERISCERGESIGDNIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGKG SGSYVSDITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFGG CPVVRVPGFTYPVRTLYLEDVLSILKSGGDNHLSSANLSTPDQKFYLTDEDKLALDEAII LAWTNDEFDALLDLVSSRGSPEIYNYQHQSTLLSPLMVFAGKGRISDVCMLLSFGADCNL KSKDGMTALEMAETENQLEAAQIIREHAESSQSNSQQAQQILDKYMATINPEQVDVSLIQ QLMRKICGDSEDGGAILVFLPGWDDINKTRQRLLDSPFFSDGSKFNIICLHSMVPAGEQK KVFSRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGQMKEKSYDPYSNVSTLQSSWVSKA NAKQREGRAGRCQPGICYHLYSRLRAASMPDFKVPEIKRMPVEELCLQVKILDPNCKTND FLQKLLDPPVDQSIANALSILQDIGALTPEEELTELGEKFGHLPVHPLISKMLFFAVLVN CLDPALTLACAADYKEPFTMPMSPVERQKAATAKLELASLCGGDSDHLAVVAAFDCWKNA KERGLAAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPYDISSCSQNSRDPGILRAV LAVGLYPMVGRLCPSFGNNRRSLVETASGAKVRVHSLSNNFNLSSRKYDESLVVFDEITR GDGGMHIRNCTVARDLPLLLVSTEIAVAPTESSEADDSDDEEEEDEETGEEEDEEEGMNI LKEESRREENMMSSPENSVKLVVDRWLPFKTTALEVAQMYILRERLTASILFKVRHPREN LPPHLGASMYAIARILSYDGHAGLSSPSESMRPKHSRTEMYETGGWEEKPNSFLNSLFWS LSLKESKPSSSGHVNRNRQHGFNTVQTEVASMHTQQNIKQRNPKAANNGDSGKKKERMYV NHTNGIHQPIAKQSKHKSANSLGLGNKKENMPSDQVYGNQQPNSAPREAASPVAKHQISK KTKNRAANNSDFGKKKTQYVPKIDLHKKEREDKVEQKGNA NT seq 3903 nt NT seq  +upstreamnt  +downstreamnt atggggaacaagaggttcaggtctgaaaatgcagcaggcaagccaagttccgtcgaagct actaggatctgggcttctaaggtcatcgaagactttcgtgcctccggtaacgaagtttac acgtttgggcataatctctcaaacaccgaacgtggcgtgattcaccagatgtgtcggaaa atgggtattcaatccaaaagctctgggcaagggaatcaaaggcgtctttcgatattcaaa gacatgtacagaaatgggaagaacaaaggagctaaggagaagtcaagaaacagagagaag cttcggtgcgtctcgtttccgcctgaggctgatgctattctccaggagttgtttacttat tatccaccctgtgacggagatactgctgctacgtcgttcaacaagtacgtaggcaactct ggtaaacaagggcagtggaaagatgatttttttaggaagccgctgatgagcggtgatgag atcttggacaaggtggcgtctttgagttctaggctgaggagtgatagagctctccaggag atctctaagttgcggtcaaggcttcccatcacatcgtttagagatgctataacatctgca gttgaatccaatcaggttattcttatttctggtgaaactggttgcgggaaaactactcag gtgcctcaatatcttttagaccatatgtgggcaagcaaaagagaaacttgcaaaattgta tgcacccaaccacggcgtatctccgcaatgtcagtttctgaaagaatatcctgtgaaaga ggtgaaagcattggagacaacattggttacaaggttcgactgcagagcaaaggtggaagg cactcatcagttgttttctgcaccaatggcattctcctgagagtgcttgtaggaaaaggc tctggtagctatgtttccgacataactcacatcattgtggatgaaatccatgaaagggat tgctactctgatttcatgttggcaattataagggacttgcttccatcaaatcctcatctc cgtctgatcttaatgagtgctacgcttgatgctgagagattctcgggatattttggaggt tgcccggttgtccgtgtccctggattcacttatccagtgagaactttatatttggaggat gtgctttctattctgaagtcaggtggagataatcatctaagctctgccaacttgagtaca ccagaccagaagttttatttaacagatgaagataaacttgctttagatgaagcaatcatc ttggcttggacaaatgatgagttcgatgccctcttagatctagtttcttctcggggaagt cctgagatctacaattatcagcaccaatcaaccttgctatcaccacttatggtatttgct ggaaaaggaaggatcagcgatgtatgcatgctcctctcattcggcgcagactgtaactta aagtccaaagatggtatgacagcgttagaaatggccgaaacagagaaccagctagaagct gctcaaatcatcagggagcatgcagaaagctctcagtctaattctcagcaagcacaacag atactcgataagtacatggcgacaatcaacccggagcaggtcgatgtgagtcttatacag cagctaatgaggaagatatgtggtgactcagaagatggtggtgccattctcgtttttcta cctggatgggatgatataaataaaacaagacagagattgcttgacagcccttttttctcg gatggtagtaaattcaacattatatgtcttcactcaatggttccagcaggggagcagaag aaagtttttagtcgtcctcctcgaggttgtcgcaagattgtgctcgctacgaatattgct gagtcagcagtgaccattgatgatgtggtttacgtgatagatagtggccagatgaaggaa aagagctatgatccttacagtaatgtctcaacacttcagtcttcatgggtatcgaaagca aatgcaaagcagcgtgagggtcgcgcaggtcgttgccagcctggcatttgttatcatctc tattctagacttcgtgcagcctctatgccagattttaaagttcctgagattaagaggatg cctgtagaagaactctgcttacaggttaagatcctcgatccaaattgtaaaacaaatgat tttctccagaaactgttggacccacctgttgatcaaagtattgcaaacgccttgagcatc ctacaagacatcggggccctgacacccgaggaagagctgacagaacttggagagaagttt ggtcatctcccagttcatcctctgataagcaagatgcttttcttcgctgtattagtgaac tgtctggatcctgcacttactctggcatgtgcagcagactacaaggaacctttcaccatg cccatgtcgccagttgaaagacagaaagctgctactgcaaaacttgaacttgcgtcgctc tgtggtggcgacagtgatcacctagcggttgttgccgcctttgactgctggaaaaacgca aaagaaagaggtcttgcggctgagttttgctctcagtactttgtctccccaagtgctatg aagatgttggatcaaatgcgtagccaacttgagtcagaacttaaaagacacgggatcatt ccttatgacatatcgagttgtagccagaactcgcgtgatccgggtatactccgtgccgtc ctagctgtgggattgtatccaatggtggggagattgtgcccatcttttggtaataatcga agatctttggtagagactgctagtggtgctaaagttcgtgtgcattcactctcaaacaac ttcaacttgtcgtcgaggaagtatgatgagtctttagttgttttcgatgagatcacacgt ggagatggaggcatgcacatacgaaactgtactgttgctcgcgatctccctttgttactg gtctcaacagagatagctgtagctcctacagagagcagtgaagctgatgatagtgatgac gaggaagaagaagatgaagaaacaggagaagaagaagatgaagaagaggggatgaatata cttaaagaagagagtaggcgtgaagagaacatgatgtcttcacctgaaaattcagttaag ttagtagttgatcggtggctgcctttcaaaaccacagcccttgaagttgctcaaatgtac attttgcgggagagattaacagcatccattttgttcaaggtaagacatccacgggaaaat ctaccgcctcatcttggagcttctatgtatgcaatagctcgtattctctcatatgatggt catgcgggactttcatctccatcggagtctatgaggccaaaacattcgaggactgagatg tatgaaactggaggatgggaagaaaagccaaactctttcctcaactcactcttttggtct ctgagtctgaaagagagcaagccttcttcttctggtcacgtgaataggaatcgacagcat ggtttcaacacggttcaaacagaagttgcatcaatgcatacgcagcaaaacatcaagcaa agaaaccccaaagcagctaacaatggtgattcgggtaagaaaaaagagagaatgtatgtt aatcacaccaatgggattcaccagcctattgctaagcaatcaaagcacaaatcagccaac agtttgggtttaggtaacaagaaagagaacatgccttcggatcaggtctatggtaatcag caaccaaactcagctccaagagaagctgcctcaccggtggctaagcatcagatcagtaag aaaacaaagaacagggcagccaacaactcggattttggcaagaagaaaacacagtatgtt ccaaagatagatctccataaaaaggaacgcgaagacaaagtagaacaaaagggaaatgca tga

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