Brassica oleracea (wild cabbage): 106341867
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Entry
106341867 CDS
T04124
Name
(RefSeq) intron-binding protein aquarius isoform X1
KO
K12874
intron-binding protein aquarius
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106341867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
boe03041
]
106341867
Spliceosome [BR:
boe03041
]
Complex B
Other components
Prp19-related factors
106341867
Complex C
106341867
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
AAA_30
ResIII
UvrD_C_2
UvrD-helicase
AAA_22
AAA
SLFN-g3_helicase
AAA_16
Motif
Other DBs
NCBI-GeneID:
106341867
NCBI-ProteinID:
XP_013636051
UniProt:
A0A0D3C515
LinkDB
All DBs
Position
C4:complement(50341100..50350979)
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AA seq
1489 aa
AA seq
DB search
MTKVYGTGAYDFKRHRVAEYPLESTTLPSSSITLSEIQQDRLTKIAEESWTGTGGGKPFD
PEVVKEIYAAELKVAGGGRKPVPLQRVMVLEVSQYLENYLWPNFDPEAASFEHVMSMILM
INEKFRENVAAWVCFHDREDLFKKFLQKVLRLKEGRELTIAEKTNYLVFMINAFQSLEDG
VVNETVLSLAGLQSWHSLSYGRFQMELCLQPDLIKKWKRSSKKWAAEAMSKGEQFDPSSS
PEANFVRGLIEEFVEVLDHGVFADEIDDTAVSQLVDDSSVLYCERFMEFLIDMLNQLPTR
RYLRPLVADIAVVAKCRLSVLYKHEKGKLFAQLVDLLQFYEKFEIKDHDGTQLTDDEALQ
FHYDRFMAFQLLAFKKIPKLQDVSLASIGSVHKSSDLRRRLSALSLEDLRDVVCSKLKLV
SRHDPWADSKDFLTEVVVSSFEKQQSQKEAINALPLYPNEQIMWDESVIPSINYSGEGCL
ALPKLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAHINNEGETAFRGWSRM
AVPINGFKIAQVKQPNIGEEKPASVTAEVTFSIKSYRTQIRSEWNSIKEHDVLFLLCIRP
SFEPLGVEEAAKATVPQRLGLQYVRGCEVIDIRDEEGNLMNDFSGKVKRDEWKPPKGDMR
TVTVALDAAQYHIDVTDIAEKGAEDVYGTFNVLMRRKPKENNFKAILESIRDLMNEYCIV
PDWLHNVFLGYGNPSAAQWPNMPNLLKTVGFKDTFLDSNHLSESFPHYEVSFVNADGAEV
LDPRPPFRITLPKTLKGNAYALSGNKISEVNPSENVDMVDVSPKEKLIVEAYTPPDPGPY
PQDQPKQNSVKFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTL
IITHSNQALNDLFEKIMERDVPARYLLRLGQGEQELATDLDFSRQGRVNAMLVRRLELLS
EVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWELFLAACGGNENNPSFVQDRFPFKEF
FSDAPKPVFSGESFEKDMRAAKGCFTHLKTVFQELEECRAFELLKSTADRANYLMTKQAK
IVAMTCTHAALKRRDFLKLGFKYDNLLMEESAQILEIETFIPMLLQRQEDGHSRLKRCIL
IGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSLAKLYNWRYRD
LGDLSIVKEAPIFHRANAGFSYEYQLINVPDYEGKGESTPSPWFYQNQGEAEYIVSVYIY
MRLLGYPANKISILTTYNGQKLLIRDVINRRCVPYSFIGPPSKVTTVDKFQGQQNDFILL
SLVRTRFVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFQLLLKRPDRLGLN
LSENTSAYTDRAVEEVGNPYLVHDVEEMAHIVHDRMNEFYKAQGVYEQYQNHTPQIEDGN
HMESDTVVSEDGESEKKMQPEVDGVVDESSKETVSMEVDNGVSSENEKA
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaggtctacggaacaggcgcgtacgacttcaagcgccacagagtcgccgagtac
ccgctcgagtccaccactctcccgagctcctcgatcactctatccgagatccagcaggac
agattaacgaagatcgccgaggagagctggaccggaaccggaggaggcaaaccgttcgat
ccggaagtcgtcaaggagatttacgcggcggagctgaaggtcgccggcggcggaaggaag
cccgttccgctgcagcgggtgatggttctcgaggtgagccagtacttggagaactacctg
tggcctaatttcgatcccgaggcggcctctttcgagcatgttatgtcgatgattcttatg
attaacgagaagttcagggagaatgtggcggcttgggtttgctttcatgatcgtgaagat
cttttcaagaagtttcttcagaaggttcttcgacttaaagaggggagagagttgactatt
gctgagaagacaaattatttggtcttcatgatcaatgcttttcagagtttggaagatggg
gtggttaatgagactgttctaagtctagcaggattacagtcttggcacagtttgtcttat
ggacgtttccagatggagctctgccttcagcctgatctaataaaaaagtggaagaggtca
tcgaagaaatgggctgctgaggctatgtcaaagggggagcagtttgatccatcttcatca
cctgaagcaaattttgttcgaggcctaatagaagaattcgtcgaggtgcttgatcacggt
gtttttgcggatgagattgatgatactgctgtttctcaattggtcgatgattcttccgtc
ttatactgcgagagattcatggaatttctcattgatatgctgaaccaacttccaacaaga
agatacttgagacctcttgtggcggatatagcagttgttgccaagtgtcgactgagtgtc
ctatacaaacatgaaaaggggaagcttttcgcccaattggttgacttgttacagttctac
gaaaagtttgagattaaggatcatgatggaactcaattaactgatgatgaagcacttcaa
tttcattacgatcgttttatggcgtttcagctacttgcatttaagaaaatacctaagttg
caagatgtgtctttggctagcattggttcggttcacaagagttctgatcttaggaggaga
ttgtctgcgctttctcttgaagatttaagggatgttgtctgctcaaagctcaaactggtt
tcaagacatgatccttgggcagatagtaaggattttctgactgaggtcgtggtctcctct
tttgagaagcaacagtctcagaaagaagccataaacgctctgcctttgtacccaaatgag
caaatcatgtgggacgaaagtgttattccaagcattaactattctggggaaggttgcctt
gctcttccaaagcttaatcttcagtttctaacactccatgattacctccttagaaacttc
aatctcttccgtctagaatctacttacgagattcgtgaagatatacaggaagctgtacca
catctacttgcacacataaataacgagggagaaactgcttttcgtggttggtcacgaatg
gccgtcccgattaacggattcaaaatcgctcaggtgaaacagcctaatattggagaagag
aagccagcatctgtgactgcagaagttaccttcagtatcaagagttacagaacacagata
agatctgagtggaattctattaaagagcatgatgtattgtttttgctttgtatacgccct
tcatttgagccgttaggtgtagaggaagctgctaaagctacagtaccgcagaggctcggg
cttcagtatgtccgtggttgtgaagtcatcgatatccgtgacgaggaaggcaatctgatg
aatgatttttctggaaaagttaaacgggatgaatggaagcccccaaaaggtgatatgagg
actgtgactgtcgctttagatgctgcacagtatcacatagatgttacagacattgctgaa
aaaggtgctgaggatgtgtatggcacatttaatgtgctaatgaggaggaaaccaaaagag
aacaacttcaaggctattctggaatctatcagagatctcatgaatgaatattgtattgta
ccggattggttgcataacgtttttcttgggtatggcaacccttctgctgcacagtggcct
aatatgccaaacctcttgaaaaccgtgggcttcaaagatactttccttgattcaaatcat
ctcagtgaaagttttccacattatgaggtatctttcgtaaatgctgatggtgctgaagtt
ctggatccaaggcctccgtttcgaatcactcttccaaagacactaaaagggaatgcttat
gctctttctggaaataagatatctgaagtaaatccatcagaaaatgttgatatggtggat
gtgtccccgaaggagaaacttattgtcgaggcatacaccccaccagacccagggccttat
cctcaggaccagccgaagcagaactcagttaaattcacacctacgcaggttggagcgatc
atttctggtattcagcctgggctcactatggtggttggtccaccgggtaccggaaagact
gatacagctgtgcaaatcttaaatgtgctatatcataactgtccttcacaaaggacctta
attatcactcattcaaatcaggctttgaatgatcttttcgagaagataatggagagggat
gtgccagcgcggtatctactccgtctaggtcaaggtgaacaagagcttgccaccgatctt
gactttagcagacaaggccgtgtcaatgccatgcttgttcgacgtttagaactgctcagc
gaggttgaaagattagcaagatcacttcaacttccagaggatgtaggttatacatgtgaa
acagctgggtatttctggttgcttcatgtctactcgcgttgggagctatttcttgctgct
tgtggtggaaatgaaaacaacccatcgtttgttcaagatcgcttcccgttcaaagaattc
ttctcagacgcgcctaaacctgtttttagcggggagtcatttgagaaagacatgagggca
gctaaaggttgtttcactcatctcaagaccgtgttccaagagctagaagagtgtagggcc
ttcgaactactcaaatcaactgctgatagagcaaattacctgatgaccaaacaagcaaag
attgtagcaatgacgtgtactcatgcggcattaaagaggagagattttcttaagctggga
ttcaagtatgataacttactgatggaagaaagtgctcagattttggaaatcgagactttc
ataccaatgttacttcagaggcaagaagatggccattcacgactcaagcgctgtatattg
attggtgatcaccaccagctgcctcccgtggtgaagaacatggctttccagaaatacagt
cacatggatcagagtctgtttacgaggtttgttcgtcttggtattccatatatcgagctt
aatgctcaaggaagagcgaggccaagcttagccaaactctacaactggagatacagagac
ttgggagacctttccattgttaaggaagcacccatctttcatagagcaaatgctggtttc
tcatatgagtatcagttgattaatgtgcctgactacgaagggaaaggagagtcaacacca
tctccatggttttatcaaaatcaaggagaagctgaatatatcgtcagtgtctatatatac
atgagattgctaggatatcctgctaataagatatcgatattgacgacgtataatgggcag
aagctcttaatccgtgatgttatcaaccgtcgctgtgttccttattctttcatcggcccg
cctagcaaggtgactacagtggataagttccaaggacagcagaatgactttattttgctg
tctcttgtacggacacgctttgttggacatctgcgtgatgtaagaaggttggtagttgca
atgtcacgtgctcggcttggtctgtacgtcttctgccgccgctctctctttgaacaatgc
tatgagctgcaaccaacgtttcagcttcttctgaaaagacccgatcggctcgggctcaac
ctgagcgagaacacatcagcatatacagatcgtgcggtggaggaagttggaaatccttat
cttgttcatgatgttgaagagatggcacacatagttcacgataggatgaacgagttctac
aaggcacaaggggtgtacgagcaataccagaatcacacgccacaaattgaagacggtaat
cacatggagagtgatacagttgttagcgaagatggtgaatctgagaagaagatgcagcca
gaggtagatggtgtagttgacgaatcatcaaaggagacggttagcatggaggtggacaat
ggagttagcagtgagaatgagaaagcttga
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integrated database retrieval system
