Brassica oleracea (wild cabbage): 106341874
Help
Entry
106341874 CDS
T04124
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SHPRH
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
boe04121
]
106341874
Enzymes [BR:
boe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106341874
Ubiquitin system [BR:
boe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106341874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
Helicase_C
SHPRH_helical-2nd
zf-C3HC4
PHD
zf-RING_UBOX
RING_XB3-XBAT31
TPR_12
TPR_11
TPR_2
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
106341874
NCBI-ProteinID:
XP_013636065
LinkDB
All DBs
Position
C4:complement(51221626..51228567)
Genome browser
AA seq
1593 aa
AA seq
DB search
MGRRKQPKPQRSLGLITDQKQVSGDEAEGSRPRTKKKKSVEDIDKPYYVNICSSSEKQER
QHFDIAEVVLTNLTLREGGSGLDCSSRFRLCNVTNFIDLMKLGHWPVLSSSDVTLELVDG
SVVWSGGFDGPGEGVWGLAHLASIKFLTLRVVPGGNEGLLSPRVRVELLQEAFDACESLL
ENTRQRWKSSMIHVMSWLRPEVMTSEARYGTELNVQEDERSITQEDSSEQSRFDASAFYE
AIKPSKTDAMLEDDITDLLPELRPYQRRAAYWMVQRERGDPITLGGEEEFISPLSISIGF
LDSAAKMFFNPFSGNISLAPEYCSPRIPGGILADEMGLGKTVELLACIFSNRKPNEEETS
VVTNGSPVTDDLKTGLKRVKRERVECTXGAVSKSRIYKGVWVQCDMCDAWQHADCVRYSP
KWTRKQAICQDADEKASQKKSKKDAVEVVVKQGEYNCQMCCELLQVTASPISTGATLIVC
PSPILQQWHSEITRHTRLGSLVTCIYEGVRNASHSKEPTVDITDLLNADIVLTTYDVLRD
DLTHDGDRHDGDRHCLRFQKKYPVIPTPLTRIFWWRICLDEAQMVERNTAAATEMALRLY
TKHRWCITGTPIQSKLDDLYGLLRFLKANPFDVSRWWTEVIREPYERRDAKAMEFTHKLF
KQLMWRSSKIHVADELQLPPQEECVSWLKFSAIEEHFYSRQHETCGNYAREVIQTLKRDI
LKRGHSSSDNPLITHAETAKLLNSLLKLRQACCHPQVGNSGLRSLQQTPMTMEEILMVLV
KKTQSEGEEALRVLIVALNGIAAISMLKQEFSEAVSLYKEALNITEENAEDFRLDPLLNI
HILHNLAEILPLVQSHKRDVRDEDHHRAAKRQRINERDSSTHASSESGLKKDGEYHEECK
TLDTVCETLKVKYLSSFNSNLSKAQQEFTKSYDQASESLRNIGKQRSVWWLDALQLAEED
KDFTSELTRKIEEAIHVSSRESSRFRTIHGMKLHLQTCMDTLESSRKTVMDKLLEINKTM
KKPRVEDIECIGNCKYCNKKDDGPTCIHCELDERFQEYEARLFRLNKSRGGVMEHASAEE
MVDLQKKKSARNHFFFGLSSRNNPSSVDNEEPTKRNGGDAVIVSKSASETEVVLGVIRNH
CKSYLDSESKLAAKNHLKTLEVMRKEYAHARDLARAQANLLRAYDEIKMATMRLQLRESE
DDTAIYALSLDELDAASVQNTNDKFLAQSSLLSIKGKLRYLKGLIETKQKQEESQDHSSP
VEETAKASDPVEQERENVLKREEACPICHETLRNQKMVFQCGHSTCCKCFFSMTERGSVH
ETMRKWVMCPICRQHTDVGNIAYADDRQNGYSSGQDHRENEASLSVQGSYGTKIEAVTRR
ILWIKSSDREAKVLVFSSWNDVLDVLEHAFSANGITFIRMKGGRKSQTAISKFKGTEKES
IQVLLLLVQHGANGLNLLEAQHVVLVEPLLNPATEAQAVGRVHRIGQDKPTLVHRFLVTG
TVEDSIYKLNRSKNVNVSSFSSSRNTKNQDQQNLTLRDLECLFASPPAEETEENEGDGER
NLRDLPPSVAAAMAAERRMKESNDASTSTTNTS
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atgggtaggagaaagcaacccaagccgcagcgttcgttgggattgatcaccgatcaaaag
caagtctccggcgatgaggcagagggttctcgcccgaggacgaagaagaagaagagtgtt
gaagatatcgataagccatattatgtgaacatatgttcttcaagtgagaagcaggagaga
caacactttgacatagctgaagttgttctcactaatttaactttaagagaaggtggttct
ggtctggattgttcgtcacggtttcgtctgtgcaatgtgactaactttattgatctgatg
aagctcggtcactggcccgtgttgtcttccagtgatgtaaccttggagctggttgatggg
tcagtggtttggtctgggggttttgatggtccaggtgaaggcgtttggggtcttgctcat
ctggcgagtataaagtttctgactttgagggttgtgccaggtggtaacgaggggttgttg
tctcctagagttagagttgagttgcttcaggaggcttttgatgcgtgtgagtctcttctt
gagaacacaaggcagaggtggaaaagtagtatgattcatgtcatgtcttggttgaggccg
gaggtaatgacatcagaagctaggtatgggacggaactaaacgtgcaggaggatgagaga
tcgataactcaggaggactctagtgaacagtctaggtttgatgcttctgctttttatgaa
gccataaagccatctaagacggatgcgatgcttgaagatgatataactgatctgctccca
gaacttaggccgtaccaacgacgtgcagcttactggatggtgcagcgagagagaggagat
ccaataactttgggaggcgaagaagaattcatctcacctttgtcaatctccattgggttt
cttgactctgctgcaaaaatgttctttaacccattcagtgggaatatctcattagcacca
gagtattgttcacctcgaattccgggcggtatccttgctgatgagatgggattggggaaa
acagttgaactacttgcatgcatcttttctaatagaaaaccaaacgaggaagaaacatct
gttgtgactaatgggtcaccagtaactgatgatttgaaaactggcttgaagagagtgaaa
agggagcgtgttgagtgcacgnntggagctgtcagtaaaagccgcatatacaaaggtgtt
tgggtacagtgtgacatgtgtgatgcttggcagcatgcagactgtgtacgttattcacct
aaatggacaagaaagcaggctatttgtcaagatgctgatgaaaaggcatctcaaaagaag
agcaaaaaagacgctgttgaagttgttgtcaaacaaggtgaatataattgccagatgtgc
tgtgagcttctacaagtcactgcctctcccatctccacaggtgccactcttattgtctgt
ccatctcctatattacagcaatggcattccgagattacacgccatacacgcttgggttct
cttgtgacatgtatctatgaaggtgtgaggaatgcctcacactccaaagaacctacggtg
gacatcactgatctcctcaatgctgacattgttttaacaacctatgatgtcctcagagat
gacttgactcatgatggagacaggcatgatggtgaccggcattgtcttagattccagaaa
aagtatcctgtgattcctactccactcacaagaatattctggtggaggatttgcttggat
gaggcccagatggtggagaggaatacagctgctgcaacagagatggctttgagattatac
actaaacaccgttggtgtatcaccggaactcctatacaaagcaaacttgatgacttgtat
ggactgttaaggttccttaaagctaatcctttcgatgtttcaagatggtggactgaagtc
ataagagaaccatatgagaggcgagacgcaaaggcaatggagtttacacataaacttttc
aaacaactcatgtggcgttcttcaaaaatccacgtggctgatgagctgcagctcccacct
caagaggaatgcgtttcatggctcaaattctccgcgattgaagagcacttttatagcagg
cagcatgagacttgtgggaattacgcccgtgaagtcatacaaactctgaaacgtgatatt
ctcaaaagaggtcatagttcttctgataatcctttaatcactcacgccgaaactgcaaag
ctcttgaactcgctcttgaaactgcgccaggcttgctgccaccctcaagtagggaactct
ggtttacgttcgttgcaacaaacgccaatgaccatggaagagattcttatggtccttgtg
aaaaagactcagagcgaaggagaagaagctcttagagtgttgatcgttgctttaaacggg
attgctgctatttccatgcttaagcaagagttttccgaagcggtatcgttatacaaggaa
gcattgaatataactgaagagaacgctgaagattttcgtcttgatccattgttgaatatt
catattctccacaatctagctgagatactaccactggttcaaagccacaaaagagatgtg
agagatgaggatcatcatcgtgcagcgaaaaggcaaaggatcaatgagcgtgatagttca
actcatgcttcttcagaaagtggtttaaagaaagatggagagtatcatgaagagtgcaaa
actctggatacagtttgtgagacattgaaagttaagtatttatcctcattcaactcgaat
ctctccaaagcacagcaggagttcacaaaatcatacgatcaggcttccgagtctttgaga
aacatagggaaacaacgttcggtttggtggttagatgccctccaacttgctgaagaggat
aaagatttcaccagcgagttgactaggaagattgaagaggccatccatgtctcctccaga
gaatcttctcgctttagaaccatacatgggatgaaacttcatctgcagacatgtatggat
acgctagaaagctctagaaaaacagtgatggataagcttttagagatcaacaagactatg
aagaaaccaagagtggaggatattgagtgtattggtaattgcaagtattgtaataagaaa
gatgatggccctacttgtattcattgcgagctagatgaacgattccaggaatatgaggct
aggctgttccgtcttaacaaatctcgtggaggagtaatggaacatgcatctgctgaagag
atggtagatctacagaagaagaagtctgctcgtaatcatttctttttcggtttgtcatcg
agaaacaatccgtcatctgttgacaacgaagaacccaccaaaagaaatggtggtgacgcc
gttattgtttcaaaatctgcatctgagacggaagtggttcttggtgtgataagaaaccat
tgcaagtcttatttagacagtgaaagcaaattggcagctaaaaaccatttaaaaactctt
gaggtgatgaggaaggaatatgcacatgcaagggacttggctagggctcaagctaacctt
ctacgtgcctatgatgagattaagatggcgacgatgagactacagcttagagaatctgaa
gatgacacggccatttatgctttgagtcttgatgagttagacgctgctagtgtccagaac
actaatgataaatttttggctcagtcctcattacttagtataaaagggaagcttcgttat
ctgaaggggttgatagaaaccaaacagaaacaagaagagagtcaagatcactcctcacca
gtagaggaaacagctaaggcttcagatcctgttgaacaggagagagaaaacgttctaaag
cgagaggaagcatgtcctatttgtcatgaaaccctacggaatcagaagatggttttccag
tgtgggcacagcacttgctgtaaatgctttttctccatgactgagcgtggttcggttcat
gaaactatgcgaaagtgggtgatgtgtccaatatgcaggcaacatacagatgttggaaac
attgcgtatgctgatgacagacaaaacggttactcgtcaggtcaagatcacagagaaaac
gaagcatcattatctgttcaaggttcatatggaacaaagattgaagctgttactagaaga
atcttatggatcaagtcaagtgaccgggaagctaaggttcttgttttctccagctggaac
gatgttcttgatgtgttggaacatgccttctctgcaaacggcatcactttcattcggatg
aaaggaggaagaaaatcacagacggcaattagcaaattcaaggggacagagaaagaatcg
atccaagtcctgctgcttctggtgcagcatggtgccaatggtcttaatcttctggaagca
cagcatgttgttctagtggagccgcttctaaatccagctacagaagcgcaagctgttggg
cgtgttcaccggataggacaagataagcctactctagttcatcgcttcctggtaacgggt
acagtggaagacagcatctacaagctgaacaggagcaagaacgtaaacgtaagctcattt
agcagcagcaggaatacaaagaatcaagatcaacagaatctgacactaagagacctagag
tgtctatttgcttcaccaccagcagaagagacagaagaaaacgagggagatggagagagg
aatctgagagatctaccgccctcagtggctgcagctatggcagccgagaggagaatgaaa
gaaagcaatgatgcatcaacatcaacaacaaacacatcatga
DBGET
integrated database retrieval system
