Brassica oleracea (wild cabbage): 106341954
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Entry
106341954 CDS
T04124
Name
(RefSeq) LOW QUALITY PROTEIN: syndetin
KO
K23288
syndetin
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
boe04131
]
106341954
Membrane trafficking [BR:
boe04131
]
Protein recycling
Others
EARP complex
106341954
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
106341954
NCBI-ProteinID:
XP_013636164
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Position
C4:44100389..44108201
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AA seq
1117 aa
AA seq
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MQPNLFPFLFNGGDLNDLGGGFESSRLFFLLPXGGGGMDFSKVGEKFLSSVKSAKSLGLL
PSSSSSLSSDRPEIPARATAAAAVARALAGLHPDQRLSISSAATELSSIYGNSHRPPPQQ
VEELEQGFYQEDFDPVRHILENIPDDQSELAYFEKQATLRLVQLDRVAEDLSHHVMEHHE
VMVKGMNLVRELEKDLKIANVICKNGRRNLTSSMNEASRDLIVHTHSKKKQALLDIVPIL
TDLRQARLMQSSLEDLVDEGNYCKAFQVLSEYLQLLDSLSEFSAIQEMTRGVEVWLGRTL
HKLDSLLLGVCQEFKEDSYVMVLDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKTVVG
EDSSAATQFSRLTYSDLCLQTPESKFRQCLLRTLAVLFQLIYSYHEIMSFVPEKKVESYI
STSSATTQKIDSVSDTSCDPQDGGLSSALGSASVPTISAEESSGTETSSPVKEASNSAVD
DSSDFGETVSSGESPWYYLRKESAALVSETLQRGRRNLWQLTTSRVSVLLSSPASSSTSM
HQFLKNYEDLSAFILAGEAFCGFEVVDFREKLKGVCENYFTAFHRQSMHALKMVLEKETW
TKLPPGTVQAINFAGLVGDGAPLIMSSRNASGSSRFPHSNKSNDSIDPSGNRSGFSYWLK
SGNPFSAKLTYYREDQDYSSVNGAASGDSEGNDNIHEDVVNPKIRDAKRINGGSPVSGDE
NEDLHADYIDEDSQLPRRSFTRSVSRSASHISTNDDLTAQTGSSLCLLRSMDKYARLMQK
LEIVNVEFFKGICQSFGVFFYFVYQVFGQENTNSGGKGGADSSNHRLKSCLSRISQECEQ
WIKPQLSSSPSSSLSFPNTVPSLADVTPASPIKTSGHVSGTSFSLKERCAAVDTVSLVSR
ILHKSKAHLQSMLMSRNGSLVEDFFGQLVGSVPDLTEHLHRTTARILLHVNGYVDRIANS
KWEVKELGVEHNGYVDLMLGEFKHYKTRLAHGGISQEVQNLLLQYGVEIFAEMLVEGFSR
IKRCTDEGRALMSLDIQVLINGLQHFVPTKVKPKIQIVETFIKAYYLPETEYVHWARGHP
EYTKAQVIGLVNLVATMKSWKRKTRVEVVDKIESAAA
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctaatctgttcccgttcctcttcaatggcggcgatctaaacgaccttggtggc
ggcttcgagagctcaaggcttttcttcttactcccannaggaggtggaggcatggatttc
tccaaagtcggcgaaaagttcctcagctctgtcaagtccgctaaatccctcggactctta
ccttcttcttcttcttccttatcctctgatcgccctgagattccggcacgtgctacggct
gctgctgctgttgctcgtgctttggctggacttcatcctgatcagagactgagtatatct
tctgctgctactgagcttagctctatttatggtaacagtcacagacctcctcctcaacaa
gttgaagagcttgaacaaggcttctatcaagaggactttgatccagtaaggcatattctg
gagaatattccagatgatcaaagtgaacttgcttattttgagaagcaggccaccctgagg
ttggtgcagctagatagagtggcggaagatctctctcatcatgttatggagcatcatgaa
gtaatggtgaaggggatgaatttggttagagagttggagaaagatttgaagattgctaat
gtcatctgcaagaatggaagacggaatttgacttcttccatgaatgaggcttcaagagat
cttattgtacacactcattccaaaaagaaacaagctcttctggacattgttcctatatta
accgatcttcgccaagcaagactaatgcagtcaagtcttgaagaccttgttgacgaagga
aactattgcaaggcatttcaagtattatctgagtacttgcagcttcttgacagtctatct
gagttttcagcaatccaagagatgacccgtggtgttgaggtttggttaggaagaactctt
cataagctggattcacttttgttgggtgtttgccaagagttcaaagaagatagttatgta
atggtccttgacgcttatgccctgatcggtgatgtctctggtctcgccgagaagatacag
agcttctttatgcaagaagttatctcagaaacgcactcagtgctaaagaccgttgttggg
gaggatagcagtgctgccacccaatttagtagacttacatacagcgatctatgtcttcag
acaccagaatccaagtttaggcaatgtctgttgagaacactagctgtgctatttcagtta
atatattcgtaccatgagataatgagtttcgttccagaaaagaaggtagaaagctatatc
tcaacaagctctgcaacaactcaaaagattgattctgtgtcagacacttcttgtgaccca
caggacggtggtctctcttcagccttgggttcagcaagcgtacctaccatttccgctgaa
gagtccagtggaaccgaaacctccagtcccgtaaaggaagcgtctaatagtgcagtagac
gactctagtgattttggagaaacagtatctagtggcgagtcaccatggtactatctacgg
aaagagagtgctgcccttgtttcagaaactctgcaaagaggacgcagaaatctctggcaa
cttacaacaagccgtgtgtcagttttgctctcgtccccagcttcttcttcaacaagtatg
catcagttcctaaaaaactatgaagacctgagcgcctttatccttgctggggaagcgttc
tgtggatttgaagttgttgattttagggagaagctaaagggtgtatgcgaaaattatttc
accgcatttcataggcaaagcatgcatgcgctcaaaatggtcctggagaaggagacgtgg
acgaaactgccacctggtactgtgcaagctattaattttgccggtcttgtgggggatggg
gctcccctaattatgtcttcccgaaatgcctctggttcttccagattccctcactcaaat
aagtcaaatgactcgattgatcctagtgggaacaggagtggattctcatattggttgaaa
agtggaaaccctttctcagcaaagttaacatactatagagaagaccaagactactcctct
gtcaatggagctgcctctggagattctgaagggaatgataatattcacgaggacgttgta
aatcccaagataagagatgcaaaacgcattaacggaggtagtcctgtttcaggagacgaa
aacgaagaccttcatgctgactatattgacgaggatagtcagcttccaagacggagcttt
acacgtagtgtatcaaggagtgcttcacatatcagtactaatgatgatttgacggctcaa
acaggatcctcgctttgtcttctaaggtcaatggataagtacgcgaggcttatgcagaaa
ctagaaattgttaatgtggaattctttaagggaatatgccaatcgtttggggtctttttc
tatttcgtgtatcaagtatttggtcaagaaaatacgaattcaggtggaaaaggaggtgcc
gactcttccaaccatcgtttgaaaagctgcttatcccggatatcacaagagtgtgagcaa
tggataaagcctcaattgtcatcatcaccatcttcttcactttcctttcccaacacagtc
cctagtcttgcggacgtgactccagcgagtcccataaaaacatctggtcacgtatcagga
acatcttttagtctcaaggaaagatgtgctgcagtggacactgtttctcttgtgtctcga
atactgcataaatcaaaagctcatctccagtctatgcttatgtcaagaaatggctctctg
gttgaagacttctttggtcaactggttggttccgtacctgatctgacagagcacttacat
aggacaactgcaaggatactgctgcatgttaatgggtatgtcgaccggattgctaattct
aaatgggaagtcaaggagcttggtgtggagcataatgggtatgttgatttgatgctcggg
gaattcaaacactacaaaacaaggcttgctcatggaggcatttcacaggaggtccagaat
ctcctactgcaatatggagttgaaatatttgcggagatgctggtcgaaggtttctctcga
ataaaaagatgtactgatgaaggacgtgctctcatgtccttagatattcaggtcctaata
aacgggctacagcactttgtgccaacaaaggtgaagccaaagatacagatagtcgaaaca
tttatcaaggcgtactatctgcctgagacggaatatgtacactgggcaaggggtcatccg
gaatatacgaaagcacaggttattggacttgtgaatttagtagccaccatgaaaagctgg
aagaggaaaacgcgtgtagaagttgtggataagattgaatcagctgctgcatag
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