Brassica oleracea (wild cabbage): 106342028
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Entry
106342028 CDS
T04124
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106342028
Transcription machinery [BR:
boe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
106342028
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Motif
Other DBs
NCBI-GeneID:
106342028
NCBI-ProteinID:
XP_013636259
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Position
C4:31442943..31445689
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AA seq
562 aa
AA seq
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MASFNSFPIPKQIVRSSSSSASRPRILVRSSMASSNSMLVFVPPHPLIKHWLSLLRCGQT
PPLPFFVRIASRWSFLSSLKEDTRFHRRDHPLKACGCASATAENVYVKLKDPKENIGVGV
VGEQMSSSSSEKANLSRSMLQYNLLGKNLLALEQTFVALESLRMERDIMLQMRKLGAAEL
FNTCLSRSRASSTTSCLPDTGTPELVDTTEEQQTFVPSTRKLRKKARRSSLMTGNDDQGS
RTTWEGIDVPRVRKPSKYRKKRERISRNEAEMSQGVKIVADMERIRTKLEEESGKVASMS
CWAEAAGMNEKLLMRNLHFGWYCRDELVKCTRSLVLFLARNYRGLGIAHEDLIQAGYVGV
LQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVHIPASIIRTMSQIQKARKTLKT
SQGIKYPADEEISKLTGYSLKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESP
EEAVMRQSARREVHNLIEGLEAREKQVMVLRYGLQDYRPKSLEEIGKLLRVSKEGIRKIE
RRAMAKLRDQPKADNLRYYLNQ
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccttcaattcgttcccaattcccaaacagatcgttcgttcttcttcttcgtct
gcctctcggccacgtatcttggtgcgatcgagtatggcctcaagcaatagtatgctggtc
tttgtacctccgcatcctttgatcaaacattggctctctctcctgagatgcggccaaact
cctcctctccccttcttcgttagaattgcatcgaggtggtcgttcctttcctcactcaaa
gaggataccagatttcaccggagagatcatcctctaaaagcttgtggctgtgcttctgcc
actgctgaaaacgtctatgtaaagctcaaagatccaaaggaaaatattggcgtgggtgtc
gttggagaacaaatgtcttcttcttcttcagagaaagccaatttgtctcgtagcatgttg
caatacaacttactagggaagaaccttttagcactagagcaaacttttgtcgccttggag
tctttaagaatggaaagagatattatgttgcaaatgaggaagttgggggctgctgagtta
ttcaatacctgcctatccaggtcccgagcttcgtcaaccacttcatgcttacctgacaca
ggaacacctgagttggtggatactacagaagaacagcaaacctttgtgccttcaacaagg
aaactgagaaagaaagcaagacggtcgagtttgatgactgggaatgatgatcagggttca
agaaccacttgggagggtattgatgtccctagagtgagaaaaccatcaaaatatagaaag
aaaagagagaggatttctagaaacgaggctgagatgtcacaaggagtcaagatagtggcg
gacatggagaggatcagaacgaaactggaagaggaaagtggcaaggtagcgagtatgagt
tgttgggctgaagcagcagggatgaacgagaaacttctcatgcgcaatctgcatttcggt
tggtactgtagagatgaactggtgaaatgcacccggtctttggttctcttcctcgccaga
aactatcgtggactcgggatcgcccacgaagatttgattcaggcagggtatgtgggagtg
ttgcaaggagcagagaggtttgatcacacaaggggttacaagttttcgacatatgtgcag
tattggataagaaaatcgatgtccatgatggtgtcacggcatgcaagaggcgtccatatt
cctgcgtcaataatccgaactatgagtcagatacagaaggctcgcaagacgttgaaaacg
agccaggggataaagtatccggctgatgaggagatttcgaaactaacaggctactcctta
aagaagattagagcagctaaccaatgcctaaaagtggttggttcaatcgacaagaaagtt
ggggattgctttaccacaaagttcttggagtttacaccagacacgacgatggagagtcca
gaggaggctgtgatgaggcagagcgcaaggagagaggtacataatctaatagaagggcta
gaggctagagagaagcaagtgatggttctacgttatggtcttcaagactacaggcccaag
tccttggaagagattgggaagctgcttagggttagcaaagaagggattcggaagatcgaa
cggagagcgatggctaaactcagagaccaacccaaagccgacaacctcagatattatttg
aaccagtga
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