Brassica oleracea (wild cabbage): 106342110
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Entry
106342110 CDS
T04124
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106342110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106342110
03036 Chromosome and associated proteins [BR:
boe03036
]
106342110
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106342110
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
106342110
mRNA degradation factors
5'-3' decay
Decapping complex
106342110
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106342110
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106342110
NCBI-ProteinID:
XP_013636400
LinkDB
All DBs
Position
C4:53073500..53076391
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AA seq
506 aa
AA seq
DB search
MDNNSSRGRFPPGIGAPDPNFQSRNPNPNPNPPPQQFLHSRTPFPQQYAQSRTPLPDAQQ
YVQRGYTQPQQIQQQQQWSTRAQLPGDSSYVEEVEKTVQSEANSNQDWKATLKLPPRDNR
YQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGT
GKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSL
RDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSIDELIQ
FLPQNRQILMFSATFPVTVKYFKDRYLRKPYIINLMDQLTLMGVTQYYAFVEERQKVHCL
NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMAQDHRNRVFHDFRNGAC
RNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRYGHLGLAVNLVTYEDRFK
MYQTEQELGTEIKPIPSLIDKAIYCQ
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggataacaatagcagcagaggaagattcccaccggggattggagctccggatcctaat
ttccagtcacggaacccgaatccgaacccgaacccgccgcctcagcagttccttcactca
cggactccgtttcctcaacagtatgcacagtctcggactccgttacccgacgctcagcag
tacgttcagagaggctacacacaacctcagcagatccaacaacagcagcagtggtctaca
cgcgctcagcttcctggtgattctagttatgtagaagaagtcgagaagacggttcaatcc
gaagctaatagtaaccaggactggaaggcaacgttgaagctcccacctcgagataaccgt
taccagactgaggatgtgacggctactaaaggaaatgagtttgaggattactttctgaag
agagatctgctaagagggatatacgaaaagggttttgagaagccgtctcctatccaggaa
gaaagcattcccattgctttgactggaagtgatattctcgctagagccaaaaacgggact
ggcaagactggtgccttctgcatccctacccttgagaagattgaccctgagaacaatgtc
attcaagctgtaattctagtcccaacccgagagctggcccttcagacatcacaggtttgc
aaggagctttcaaagtacttgaaaattgaggttatggtcaccactggcggtaccagcctg
agggatgatatcatgcgtttatatcaacctgtccatttgctcgttggaactcctggaagg
attttggatcttaccaaaaagggtgtgtgcgttttgaaagactgtgccatgcttgtaatg
gatgaggccgacaagcttctgtcggcagagtttcaaccttctatagatgagttgatacag
ttcttgccgcaaaaccgtcagattctgatgttttcagctacgtttcccgtcactgtgaag
tacttcaaggaccgatatctcaggaagccttacattatcaatctcatggatcagctgaca
ctaatgggtgtcacacagtactatgcttttgttgaagagaggcagaaggtgcactgcctt
aacacgcttttctctaagctgcaaataaaccagtccattatcttttgcaactccgtcaac
cgtgtggagctgctagccaagaaaatcacagagcttggttactcatgcttctatatccat
gcgaagatggctcaagaccaccgtaacagggttttccatgatttccgtaatggtgcttgc
agaaaccttgtttgcactgatttgtttacacgtgggattgacattcaagctgtgaatgtg
gtcattaattttgatttcccgaggacctctgagtcgtatctacacagggtaggtagatca
ggaagatatggacaccttgggttggctgtgaatttggtaacatatgaggaccgcttcaaa
atgtaccaaactgagcaagaacttggaaccgaaatcaagccaattccctcacttatcgac
aaggcaatctactgtcagtaa
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