Brassica oleracea (wild cabbage): 106342308
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Entry
106342308 CDS
T04124
Name
(RefSeq) LOW QUALITY PROTEIN: RRP12-like protein
KO
K14794
ribosomal RNA-processing protein 12
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
boe03009
]
106342308
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
90S particles
Other 90S particles
106342308
Pre-60S particles
Other pre-60S particles
106342308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP12_HEAT
HEAT_RRP12_N
GIT1_C
MMS19_N
Ltn1_1st
Motif
Other DBs
NCBI-GeneID:
106342308
NCBI-ProteinID:
XP_013636650
LinkDB
All DBs
Position
C4:complement(9095306..9101744)
Genome browser
AA seq
1264 aa
AA seq
DB search
MDSLCLDIETGLCLTPSEPDLPLSADFGEFMLSRLSQSKRPDHNHLCAVIDELSKALAEG
NHSRTPVAYFAATCSSLDSLLSADAESPMDVVQPHVVILSLVFPKVSPGVLKRNGLALRL
VLSVLRLRSVTSECLISALKCLVHLLMMGNEVSEAHSILLNLVTHSDGKVRKLANSCLRD
VLEKTRGTKACQSVSGTIAESFQKHLDLAHKSEARSAEGAQQVLYLLSTLKECLALMSKK
HIANVIEGFKMLMVTRDAFVARPVIDSLNALCLNPTSEVPAEALVEVLYHAAVLFSAPET
SADAMTFTARLMKVGMMRAFSMNRDVCVVKLPGVFNGLKDIIASDHEEAIFAATDALKSL
ICSCIDESLIREGINGIRNSNLDVKKSSPTVIEKLCATVESLLDYKYHAVWDMAFQVVST
MFNKLGEESSFFMRKTLEDLSDMQGLPDEGFPYRKQLHECVGSALGAMRPETFLNIVRLN
LEASDLSEVNVWLFPILKQYTVGGRLSFFTETIFRMIETMSQKAQQLKLQGLTAASRSVD
SLVYSLWALLPSFCNYPVDTAESFEDLGRILCGALQTQAENRGIICTSLNILIQQNKKVV
EGKEVPVNDASPALVRAIARYDSHSAAANLEVIRSCAPKLLDVLSKIFHESGKDDGGSLQ
SAIGNLASIAEKKTVSKLLFKTLRELLMATKTAIAEDERPVSGMDVDNAADKNSSSNLRA
RLFDLLVSLLPGLDGQEVDTVFSSLKPAMQDPKGQIQKKAYKVLSVILKSSDGFVSKNLE
ELLELMHNICHVSAKRHKLDCLYFLLAYASKTDDLKARKDIVSSFLPEVILALKEVNKKT
RSRAYDVLVQIGHAYADEENGGDNEKLHGYFNMVVGCLAGEKPQMISAAVKGVARLTYEF
SDLIASAYNLLPSTFLLLQRKNKEITKANLGLLKVLVAKSPVEGLHANLKSIVEGLLKWP
EGTKNLFKAKVRLLLEMLIKKCGTEAVKSVMPEEHRKLLTNIRKVKERKERKYAAGSEMS
RSQHSKETLSKASRWNDTKIFSDFADEDEDSDGDYMDAESNGRSKAPSVLKSKASKKHPR
QSHLEVDESDDEPLDLMDRYKTRSALRSSELGRKRKADSDEEAEFDAEGRLIIYEGERSK
RKEISDADSDAKSRFSVNTSRKNQKRLKTSESGYAYTGKEYASKKASGDLKRKDKLEPYA
YWPLDRKMMSRRPDQRAVAVRGMSSVVKLTKRLEGKSAAEALATTKFKKFRSGKKKSAGK
KKSK
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atggattcattatgtctcgacattgaaaccggcttgtgcctcacaccctcagaaccagac
ctccctctttccgctgactttggggagttcatgctctctcgcttatcacaatccaaacga
cctgaccataaccacctctgcgctgtaatcgacgagctatcaaaagctctagcggaaggt
aaccatagccggacccccgtggcttacttcgccgcaacgtgcagctccctggacagcctc
ttgtctgcagacgctgaatcacctatggatgtagtccagccacatgttgtcatcctttcc
cttgtgttccctaaagtctcaccaggagtactgaagaggaatggtttggctttgcgtctc
gtcctcagcgttctgcgtctaagatcagttacatctgagtgcttgatctcagcattgaag
tgtttagttcatctcctcatgatggggaatgaagtctctgaagctcacagcatcttgctg
aatcttgtaactcattcagatggaaaggtaagaaagctagcaaactcgtgtctccgtgat
gtcctggagaaaactcgtggtacaaaggcatgtcaatcagtgagtggaactatcgcagaa
tcattccagaaacatctagacctcgctcataagtcagaagcgcgctctgcggaaggagca
cagcaagtgctttaccttctcagcactctaaaagaatgcttggccctgatgtcgaagaaa
cacatagctaatgtgattgagggctttaagatgctgatggttacgcgagatgcattcgta
gcaaggccagtgatcgactctttaaacgcactttgtctcaatccaacatccgaggttccg
gctgaggcgctggtcgaagtgttgtatcatgctgctgtactgttctcggcgccggaaaca
tctgctgatgccatgaccttcacagcacgcttgatgaaagttgggatgatgagggctttt
tctatgaacagagatgtttgcgtggttaagcttcctggtgtgttcaatggtctgaaagat
attattgcgtctgatcatgaggaggcaatctttgcagcaaccgatgcgttgaagagttta
atatgttcatgcattgatgaaagcttgatcagggaaggcatcaacggaatccggaattca
aacttggatgtaaagaagtctagtccaacagttattgaaaaactgtgtgcaacggttgaa
agcttgcttgattacaagtaccatgcggtctgggacatggcttttcaagttgtttcgacc
atgttcaataaattaggggaagaatcttcattttttatgaggaagaccctcgaggattta
tcagatatgcaaggtttacctgatgaaggctttccttataggaaacagttgcatgagtgt
gtaggatcagctcttggtgctatgcgacctgaaacatttctaaacattgtgcgtttaaac
cttgaggcgagtgatctgtctgaggtaaacgtttggctcttcccaatcctgaagcagtac
acagttggaggacggctaagtttcttcacggagactatttttagaatgatagaaacaatg
agccagaaagctcaacagctcaagctacaaggtcttactgcagcatctaggagtgtggat
tctctcgtatactcattgtgggctctgttaccttcattttgtaattatcctgtggatact
gcggagagctttgaggatctggggagaatattgtgtggagctcttcaaacgcaggctgaa
aaccgtggaattatatgcaccagtttgaatattctgattcaacaaaataagaaagttgtg
gagggtaaggaagtacctgtcaatgatgcaagtcctgcgttggttcgagctatcgctcgt
tatgattcacacagtgcggcagctaatttggaagttatacggtcgtgtgctcctaagtta
ttggatgttttgtcaaaaatatttcatgaatctggcaaagatgatggcggttctcttcag
tctgcgatagggaatttggcttccatagcggagaaaaagactgtttcaaagctacttttc
aagacactgcgagagcttttaatggctacgaaaactgccatagcagaagatgaaagacct
gttagtgggatggacgtggataatgctgcagacaaaaattcttcttcaaaccttagggca
aggttgtttgatctgttagtttctcttttacctggtttggatggtcaagaagtagatacc
gtattcagttctttgaagcctgcaatgcaggatcccaagggacaaattcaaaagaaagcg
tacaaagttctttcagttatcttgaagagttctgatggatttgtttcaaagaacctggag
gagttgcttgagctgatgcacaatatatgccatgtctctgccaagcgccataaacttgat
tgcttatacttcctattagcttatgcgtcaaagacggatgatctaaaggcgagaaaggac
attgtttcttcatttctacccgaagttatacttgctttaaaggaggtaaataagaaaaca
agaagcagagcctatgacgtgcttgttcagattgggcatgcatacgcagatgaggaaaat
ggtggagacaatgagaaattacatggttacttcaatatggtggttggttgcttggcggga
gaaaaacctcagatgattagtgctgccgttaagggagtagctcgtttgacatatgagttc
tccgatctcatagctagtgcttacaatttgcttccttcaacatttcttctcctccagagg
aaaaataaggaaatcacaaaagcaaatttaggtttgttaaaggtgttggtggctaaatca
cccgttgaaggactacacgcaaacttaaagagcattgttgaaggcttacttaagtggcca
gaaggaaccaaaaacctttttaaagcaaaggtgaggcttttgttggagatgctcatcaag
aaatgtggcacggaggctgtcaagtctgtgatgcctgaggaacataggaagctccttaca
aacatccgaaaggttaaggaacgtaaagagaggaaatatgcagctggctctgagatgagt
agatctcagcattcaaaagaaaccctatcaaaggccagccggtggaatgataccaagata
ttttctgattttgcggatgaagacgaggacagcgatggagactacatggatgcagagtcg
aatggccgtagcaaggctccctctgtattgaaatctaaagcatccaaaaaacatccgagg
cagagtcatcttgaagttgacgagtcagatgatgaaccgcttgacttaatggaccgatac
aaaacaagatcagcccttcgatcaagcgagcttggcagaaaacggaaagctgactcggat
gaagaagcagagtttgatgcggaaggacggctaatcatctacgaaggagagagatccaaa
agaaaagaaatctctgatgcagattcggatgccaagagcaggttctctgtaaacacatcg
aggaagaaccagaagaggttaaagacatcagagtctggatacgcttacacagggaaagag
tatgcaagcaaaaaggcaagtggggatcttaagaggaaagataagcttgaaccgtatgca
tattggccacttgaccgtaagatgatgagccgtagaccagatcagagggcggttgcagtc
agaggtatgtctagtgtggttaagctgacgaagaggttggaaggtaagagcgctgcggaa
gcacttgccactactaagttcaaaaagttcaggagtggtaagaagaaatcggctgggaag
aagaaaagcaagtaa
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