Brassica oleracea (wild cabbage): 106342740
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Entry
106342740 CDS
T04124
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04120
Ubiquitin mediated proteolysis
boe04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106342740
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
106342740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
boe04121
]
106342740
Enzymes [BR:
boe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106342740
Ubiquitin system [BR:
boe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106342740
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
106342740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_2nd
EIF3I
zf-C3HC4_2
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_TEP1_C
Beta-prop_EML
WD40_RFWD3
zf-C3HC4
WD40_like
Beta-prop_CAF1B_HIR1
zf-C3HC4_3
Beta-prop_WDR75_1st
zf-RING_2
Beta-prop_WDR35_TULP_N
zf-RING_UBOX
Beta-prop_IFT122_1st
Beta-prop_DCAF12
zf-C3HC4_4
U-box
YbfN
zf-RING_5
WDR90_beta-prop_4th
Beta-prop_SCAP
YpoC
Beta-prop_IFT122_2nd
zf-RING_6
DUF1664
Prok-RING_4
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
106342740
NCBI-ProteinID:
XP_013637215
UniProt:
A0A0D3BSM6
LinkDB
All DBs
Position
C4:complement(10386365..10390658)
Genome browser
AA seq
676 aa
AA seq
DB search
MEEIRKDPLVPAVKPDPRTSSIGEGPNRRHENDEGGSGGLEIGAPDLDKDLLCPICMQVI
KDAFLTACGHSFCYMCIITHLKNKSDCPCCSQHLTNKQLYPNFLLDKLLKKTSARHVSKT
ASPLDQFRDALQRGCDVSIKEVDNLLTLLAEKKRKMEQEEAERNMQILLDFLHCLRKQKV
DELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPPEKSHTGF
NSNSLSIRGGNPPANFQNKKVEGKAQGSSHGISKKDAQSGSDSQSLNQSSVSMARKKRIH
AQFSDLQECYLQKRRQLVDQPHSNQESDNSVVRREGYSYGLADFQSVLTTFTRYSRLRVI
AEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADIQCPIVEMST
RSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSML
VSGSDDCKVKVWCTKQEASVLNIDMKANICCVKYNPGSSNFIAVGSADHHIHYYDLRNIS
QPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLT
VNSEYLACGSETNEVYVYHKEITKPVTSHRFGSLDMEEAEEEAGSYFISAVCWKSDSPTM
LTANSQGTIKVLVLAA
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggaagagattaggaaggatccgctagttccggctgtgaaacccgatccgagaacctcc
tccatcggagaaggccccaaccgccgccacgaaaacgacgaaggaggaagcggtggtttg
gagattggagctccggatctggataaggacttgctctgtccgatttgtatgcaggttata
aaggacgctttcctcacggcgtgtggacacagcttctgctacatgtgcatcatcacgcac
cttaagaacaagagcgattgtccctgttgtagccagcacctcacaaataagcagctttac
cctaatttcttactcgataagctgttgaagaaaacttcagctcggcatgtgtcgaaaacg
gcatcgcctttggatcagtttcgggacgcattacaacggggttgtgatgtgtcaattaaa
gaggttgataatctgctgacgcttctcgccgaaaagaagaggaaaatggaacaggaagaa
gctgagaggaacatgcagatactcttggactttttgcattgtctgaggaagcagaaagtt
gatgaacttaatgaggtgcaaactgatcttcagtatattaaagaggacataaatgcagtt
gagagacatagaatagatttataccgagctcgggataggtactctgtgaagctgcggatg
ctcggagatgatccaagcacacgaaatgcttggccgcctgagaagagtcacaccggcttc
aactccaattctctgagcataagaggagggaatccaccagccaattttcaaaacaaaaag
gtagagggaaaggcacaaggaagctctcacgggatatcgaaaaaggatgcacagagtgga
tcagattcccagagtttgaatcaatcatctgtctcaatggccaggaagaaacggatccat
gctcagttcagcgatctacaagagtgttacctccagaagaggcgtcagttggtagaccaa
ccacatagtaatcaagaaagtgataatagtgtagtgcgtagggaaggctacagctacggc
cttgcagattttcaatctgtgctcactacctttactcgctacagtcgtctgagagttata
gcggaaattcggcatggggatatatttcattcagctaacattgtatcaagcatagagttt
gatcgtgatgatgaactgtttgcaactgctggtgtttcgagatgtataaaggttttcgac
ttctcttcggttgtaaatgaaccggcagatatacagtgtccgattgtggagatgtcaact
cgctccaaacttagttgtttgagttggaataagcatgagaaaaatcatatagcgagcagt
gattacgaaggaatagtaacggtgtgggatgtaactactagacagagtcttatggagtat
gaagagcacgaaaagcgtgcctggagcgttgacttttcgcgaacagaaccatctatgctt
gtatctggtagtgacgattgtaaggttaaagtttggtgcacaaagcaggaagcaagcgtg
cttaatattgatatgaaagcaaacatctgttgtgtcaagtacaatcctggctcaagcaac
ttcattgcggttggatcagctgatcatcacatccattattacgatttaagaaacataagc
cagccacttcatgtcttcagtggacacaagaaagcggtctcctatgtgaagtttttgtcc
aacaacgagctcgcgtctgcatctactgatagcacactacgcttatgggatgtcaaggac
aatttgccagttcggacattcagaggacacactaacgagaagaactttgtgggtctcaca
gtgaacagcgagtatctcgcctgcggaagcgagacaaatgaagtatatgtatatcacaag
gagatcacgaaacctgtgacatcgcataggtttggatcactagacatggaggaagcagag
gaagaggcgggttcatactttattagtgcggtttgctggaagagcgatagtcccacgatg
ctgactgcgaatagccaaggaaccatcaaagttctggtactcgctgcttga
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