Brassica oleracea (wild cabbage): 106342914
Help
Entry
106342914 CDS
T04124
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03008
Ribosome biogenesis in eukaryotes
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106342914
09123 Folding, sorting and degradation
03018 RNA degradation
106342914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106342914
03019 Messenger RNA biogenesis [BR:
boe03019
]
106342914
03009 Ribosome biogenesis [BR:
boe03009
]
106342914
03016 Transfer RNA biogenesis [BR:
boe03016
]
106342914
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106342914
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
106342914
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
Pre-60S particles
RNases
106342914
Transfer RNA biogenesis [BR:
boe03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
106342914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
106342914
NCBI-ProteinID:
XP_013637433
LinkDB
All DBs
Position
C4:17535877..17543307
Genome browser
AA seq
1004 aa
AA seq
DB search
MGVPSFYRWLIERYPLILQDVIEEEPLDVKVPVDTIKPNPSCVEYDNLYLDMKIIIHPCF
HPEDRGSPTTFSEVFQCMFYYIDRLFVMVRPQKLLFLAIDGVAPRAKMNQQRSRRFRAAK
DAAEAASEKERLRQEFESEGRRLPPKLDSQVFDSNVMTPGTEFMSTLSFALQYYIHVRLN
SDPGWKNIKVIPSDANVPGEGEHKIMSYIRLQKNHPGYNPNTCHFLYGLDADLIMLALAT
HEVHISILREVVFTPAQQDKCFLCGQLXHWAADCEGKVXSKTGDLSDKAETDVVAKKPYQ
FVNIWTLREYLEHDMQIPNSQLQKNLDRIIDDFIFICFFVGNDFLPHMPTLEIQEGAIXL
LMSVYKKEFGSSTSYSSNGSKLNLKNMEHFIQAVGLYXNNIFQRRAQNHQRQSERFSRDR
AQSSRNRNYDPVVQLDSLVEVSDSLRPSFDNNTSVANVETXYNIQEEIDNREQLKFKLKK
LLREKSDGFSSGKGEEDKVRLGVQGWRERYYEEKFIAKTIEEMEQICRDVVLKYTEGLCW
IMHYYYHGVCSWNWSVYPYHYAPFASDLKFLDKLDIKFELGSTFKQFNQLLAVLPSASAH
ALPECFRKLMTDPSSPIAELYPPDFEIDMNGKRYSWQGIAKLPFIEEQRLLDAAAKLEHS
LTNEEVRRNNVLSDMLFVVLSYPLAELIRSLSSRTIKLSNKERATVKEKIDHGLSEGMNG
YLALCGGDRQHSCFSSPIEGMEDVLANQVICAIYKLPDDLRGSDIARPPPGVVLPKKTVQ
LADLKGGANQWHEDGDRRRAPAKIIKIRGEDYESFVGSKVLEDLFVLKSVFSLFEYPFRG
IGLGKQRTDPNTIFHNNQVSRKVPSLRGSAVQRKHPQSELALKKNRSHQSELTEEEKTSI
RKRKEKEKRGRNMANRRDRAKNEQQANKGESNLENKRPRSEVNEENRLEHKSPRFTEERN
INTEGKEQNTCAQSELTEKNAXRKRKEKEEKKRNLAHRRNRSKI
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgtcgttctacagatggttaattgagaggtacccattgattctgcaagat
gtcatcgaagaagaacctctcgacgtcaaggttccggtcgatactatcaaacctaatcct
agctgcgtcgagtatgacaatctgtacctcgacatgaaaataatcattcatccttgtttc
catcctgaagacagaggttctccaacaacgttttcagaggtgtttcaatgcatgttttat
tacatagacagacttttcgtcatggttcgacctcagaagctgttatttttggctattgat
ggtgttgctccaagggctaagatgaatcaacaaagatccagaaggtttcgagcagcaaaa
gatgcagcagaggccgcttctgaaaaagagcgactgcgtcaagagtttgagagtgaaggg
aggaggttacctcctaaactggactctcaagtttttgactctaatgttatgactcctgga
acggagttcatgtctactctttcatttgcgttgcaatactacattcacgttagacttaac
tctgaccctggttggaaaaatattaaggttatcccctcagatgctaatgttcccggtgag
ggggaacacaagatcatgtcttacatacgtcttcaaaagaaccatcctggttacaacccc
aacacttgtcattttctgtatggtttggacgccgacttgattatgctggctttggccaca
cacgaagttcatatttctatccttcgtgaggttgttttcactcctgcacaacaagacaaa
tgcttcttgtgcggtcagctcnggcactgggcagcagattgtgagggcaaggtatagagc
aagacaggagacttgtctgataaagctgagacagatgttgtggctaagaagccataccag
ttcgtcaatatctggacgcttcgagagtatttggagcacgacatgcagatacctaactcg
caattgcaaaaaaatttggaccgcataattgatgacttcatcttcatctgtttttttgtt
ggcaatgatttcctgccacatatgcctacactggagatacaggaaggtgctatataatta
cttatgtccgtgtacaagaaggaatttggatcaagtacaagttactcaagtaatggaagc
aagctgaatttaaaaaatatggagcattttatccaggccgttgggctctatngaaataat
atatttcaaagaagagcacaaaaccatcagaggcaatcggaaaggtttagtcgtgaccga
gctcaatcgagcagaaatcgtaactatgacccggttgtgcaactagattctctagttgaa
gtgtccgattcattgcgtccgtcatttgacaataacactagtgtggcgaatgtggaaaca
tagtataacatccaagaagaaatagataacagagaacaattgaagtttaagcttaagaaa
ctgttgcgggaaaaatcagatgggttcagttcaggaaaaggcgaagaagataaggtgagg
ctaggtgtacaaggatggagggagagatactacgaggagaaattcatagctaagactata
gaggaaatggaacaaatatgcagagatgttgttttgaagtatacagaaggtctttgttgg
ataatgcattactattatcatggtgtttgttcatggaattggtcagtttatccttatcat
tatgcacctttcgcatctgatctcaagttccttgataagctagatattaagttcgaacta
ggttccacatttaaacaattcaatcagcttcttgcagttcttccatctgcaagtgcacat
gctctcccagaatgttttaggaaactgatgacagatccaagttcacccatagctgagtta
tatcctcccgattttgagattgacatgaatggaaagcgctattcttggcagggtatagca
aaactgccttttatagaagaacagcgtcttctggatgcagccgcaaaattggagcactca
ctgacgaacgaagaagttcgaagaaacaatgttttgtctgacatgctctttgtggtttta
tcttatccgcttgctgagctcatccgttctcttagtagccgcactattaaattgagcaac
aaagaacgagcaacagttaaagaaaaaattgaccatggactaagtgaagggatgaatggt
tacttggcgttatgtggtggagatcgtcagcattcatgcttcagctcccccatcgagggg
atggaagatgtattagccaatcaagtgatttgtgccatatacaaacttccagatgatctt
agaggaagcgacattgctcgtccacctccaggagtggtgttgcctaaaaagactgtacaa
ctagcggatttgaaaggtggagctaatcaatggcatgaagatggtgatcgaagacgagct
cctgcaaagattataaaaataagaggtgaagattatgaatcttttgtgggatccaaagtt
ttggaagacctttttgtgttaaaatctgttttctcactgtttgagtatccatttcggggg
ataggcttgggaaagcagcgcacagatccgaatactatattccacaacaatcaggtgtcg
agaaaagtcccatcactccgagggagtgcggtacagaggaaacaccctcagagtgaatta
gcgttgaagaaaaacagaagccatcaaagtgaactcaccgaggaggagaagacatcaatc
agaaagcgcaaggaaaaggagaaaagagggagaaatatggctaacagaagggacagagcg
aagaatgagcagcaagcaaacaaaggagaaagcaatctggaaaacaaaaggcctcgaagt
gaagtcaatgaggagaacagactggaacacaaaagtcctcgattcactgaggagcgaaac
ataaacactgagggtaaggaacaaaacacatgcgctcaaagcgaactcactgagaagaat
gcannacgaaagcgtaaggagaaggaggagaaaaagagaaatttagctcatagaagaaac
agatccaaaatatga
DBGET
integrated database retrieval system
