Brassica oleracea (wild cabbage): 106342972
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Entry
106342972 CDS
T04124
Name
(RefSeq) protein CCA1 isoform X1
KO
K12134
circadian clock associated 1
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
106342972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
boe03000
]
106342972
Transcription factors [BR:
boe03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
106342972
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Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
106342972
NCBI-ProteinID:
XP_013637506
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Position
C4:complement(679876..682970)
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AA seq
537 aa
AA seq
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METNSSGEDLVVKTRKPYTITKQRERWTEEEHNRFLDALRLYGRAWQKIEEHVATKTAVQ
IRSHAQKFFSKVEKEAEAKGVPVAQTLDIAIPPPRPKRKPNNPYPRKTGTGSLPISKTGL
NDAKESLGSAKASLPETASEDPQEDNCSDCLTHQHLSAASNASTFLEFLPSREQEQGNNK
ESNYSDLNIEAGGPHTYPTHIPLLVPLGTTSLSHAPPSQPDETSHQSFPEHIMSTLLQTP
ALYTAASFASTFGGGPQGNLAAMAAATVAAASAWWAANGMLPLCAPPFSSGNPPTTYEVN
ALTKTMDQEHSEASKARSSLESEETKNGSQPDCHHHTCAATETDAKGSDGARDRKQVDRS
SCGSNTPSSSDDVEADALVERQENGGTTNEEVKEVDGDTTNNPQTSESNARRSRISSSIL
ADPWKSVSDEGRIAFRALFAREVLPQSFTYQREEGQQQSYPMELDLNSTADDQEENRNIA
FLGASKQQLSRGRTGFKPYKRCSMEAKESRVINNTNPIISVEQKDPKRIRLETQTST
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggagacaaattcgtctggagaagatctggttgttaagacgaggaagccgtatacgata
acaaagcaacgtgaaagatggactgaggaagaacataataggttccttgatgccttgagg
ctttacggtagagcttggcaaaagatagaagaacatgtagcaacgaaaactgctgtgcag
attagaagccatgctcagaaatttttctccaaggtagagaaagaggctgaagctaaaggt
gtaccagtggctcaaacgctagacatagctattcctcctccacgccctaaacgtaaacca
aacaatccttatcctcgaaagaccggaactggatctctccccatctctaaaacgggtctg
aacgatgcaaaagagtcccttggatcagcaaaagcttctcttcctgagacggccagtgaa
gatccgcaggaagacaactgctcagactgtctcactcatcaacacctctctgctgcatca
aacgcaagcacttttctagagttcttaccttcacgggaacaggaacaggggaataacaag
gagtcaaactacagtgatttgaatatagaggcaggaggacctcacacttatccaacgcat
atccctctgctagttccattgggtacaacgtctctgtcacatgctcctccttcacagcca
gacgagactagtcatcagtcctttcctgaacatatcatgtcgacccttttacaaacacca
gctctctatacagctgcatcttttgcctcaacgtttggtggcggcccacaagggaacttg
gctgccatggctgcagccaccgttgcagctgcaagtgcttggtgggccgccaatgggatg
ctcccactctgcgctcctccttttagttcaggcaaccctccaactacttatgaagtaaac
gccctcacaaaaacaatggatcaagaacactccgaggcttcaaaggctcggtcttcgttg
gaatcagaggagactaaaaatgggagtcaaccagattgtcatcatcatacttgtgcagcg
actgagactgatgcaaagggatcagatggagcgagagataggaaacaagttgacaggtct
tcttgtggctcgaacactccctcgagtagtgacgatgttgaggctgatgctttggtggag
aggcaagagaatggtggcaccaccaatgaggaagtgaaagaagtggatggggacactact
aacaacccacaaacttcagaatctaatgcgcgacgcagtagaatcagtagctctatctta
gctgatccatggaagtctgtttcagatgagggacgaattgcttttagagctctctttgca
agagaagttttgccacaaagttttacatatcagagagaggagggccaacaacaaagttat
ccaatggagcttgatcttaactccacagctgatgatcaagaagagaacagaaacatagcg
tttttgggtgcttcaaagcagcagctaagtagagggagaacaggtttcaagccttacaaa
agatgttcaatggaagccaaagaaagtagagtcatcaacaacaccaatcctatcatcagt
gttgaacagaaagatcctaagcggattaggttggaaactcaaacttcaacatga
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