Brassica oleracea (wild cabbage): 106343378
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Entry
106343378 CDS
T04124
Name
(RefSeq) paired amphipathic helix protein Sin3-like 1 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
boe03036
]
106343378
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
106343378
REST complex
106343378
Heterochromatin formation proteins
Other heterochromatin formation proteins
106343378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
106343378
NCBI-ProteinID:
XP_013638049
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All DBs
Position
C1:43697142..43704205
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AA seq
1362 aa
AA seq
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MKRIRDGSGSQFRRTLGSSRGELYGQSPVPGSGDTEAGRGEGGRIASGDVTSQKLTTNDA
LSYLKDVKDMFHDQRETYDRFLEVMKDFKALRIDTRGVIARVKELFKGHNHLIYGFNTFL
PKEFEITLIEEDEAPPKTTVEFEEAINFVNKIKTRFKHDEHVYKSFLGILNMYRKEKKGI
SEVYNEVSILFEGHSDLLEEFTRFLPASLPSHSAAQHSRSQAQRYNDPRSGPPLIRQMQV
EKERRRERAVTSRSDYSADHNDLCDDKTVVKMQREQRKLADKENRERRGRVLDEREADQD
NLDHFPEKRKSSRRAEGPEAYSGSASHTEKDNLKSMYNEAFVFCEKVKERLCSQDDYQTF
LKCLNIFSNGIIQTKQLQNLVSDLLGKYPDLMDEFTQFFERCESIGIQNGFQHLAGAMSK
KSFSSDEQASRSMEVEEKEREHKPDLEVVNETEQYKEYVGKSIQELDLSNCECCTPSYRL
LPSDYPVRTASQRSELGSEVLNDRWVSVTSGSEDYSFKHMRRNPYEEILFRCEDDRFELD
MLLESVSSAVRSAENLLNIITEKKITFSGSFRIEDHFTALNLRCIERLYGEHGLDVIDIL
HKNPATALPVILTRLKQKQDEWKKCRDDFDKIWAKVYAKNHYKSLDHRSFYFKQQDSKNS
SAKSLVAEIKELKEKTQNEDDILLSISAGYRQPINPNLDYEYFSRDIHEDLYKLVHFSCE
ELCSTKEQLSKVLRLWENFLEPVLGVPPRAKGTDPVEDVPKTLDVNHSTSTNEEANGSCG
ADTATLASRKLISVANGDQNASSGASNLGEIGLLNKDSTGKEDLQDADTADGDGVTSSAV
KLQKEHETGNRADQRSEMPIPMDINERASTSSLSTPSGENNHCVLEKEDLAGSHEIQAKP
SNSLSDIHRIKTSPSTQAGDVGKLIALASGIRSDSSTDNMNSDEPEGPLTFEKEEGELSP
NGDFEDNVGLHEDLGVKSTSKPENLADAEVENEDEDSENASEGGEECSHDENREEESGEH
DEVDGKAESEGEAEEVDSHILAGDTELLRQSERVLLSARPLSKHVAAVLRDGMTKDIRVF
YGNDDFYVLFRLHQILYERILSAKRNCSGDELKSKNSKDTDSLDPYARFMKGLYGLLDGS
VENTKFEDECRAIFGNQSYVLFTLNKVIYKLVKQLQAVVADEMDNKLIQLYEYEKSRKPG
RVIIDSVYYENARVLLHDENVYRLECSSSPSRLSIQLMDNIVEKPEPYAVSMDPMFASYL
QTEFLSTSREKKEEGHNILLRRNRRPYSGLDDLEALCKAMEGVEVVNGLECKMSCSSYKV
SYVLDTEDFFHRKKKKKKIEHISQQRNKDRVERFHRFLSASR
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatacgagacggctccgggtctcaatttcgacgcactttgggctcttctcga
ggcgaattatacggacaatctccggtccctggcagtggtgacactgaagctggaagagga
gagggagggagaatcgctagtggagacgttacctctcagaaactaacaaccaatgatgcc
ttgtcgtacctcaaggatgttaaggacatgtttcatgatcaacgggagacatatgacagg
tttcttgaggttatgaaagattttaaagctctaaggatcgacacacgcggtgtgattgcc
cgagttaaggagttgttcaagggacataaccatttgatatacggatttaacaccttcttg
cctaaagaatttgaaattacgcttattgaggaagacgaagccccgcctaagacgactgtt
gaatttgaagaagctattaattttgtgaataaaattaagactcgattcaagcacgatgaa
cacgtctataaatctttcttgggtatcttgaatatgtaccgaaaggagaagaagggaatt
agtgaggtttacaatgaggtatctatcctttttgagggtcactcggatttgcttgaagag
tttactaggtttttgccagcgtctttgccatctcattcagcagcgcagcatagccggagt
caggcccaacgctacaatgacccaagatcaggccctcccctaattcgtcaaatgcaagtg
gagaaggaacgccgacgagaaagggctgtaacttcccgcagtgattatagtgctgatcat
aatgacctttgtgatgataaaacggtggtcaagatgcaaagagagcagcggaagcttgct
gataaggagaacagagaaaggagaggccgtgttctcgacgaaagagaagcagatcaagat
aacttggaccatttcccagagaaaagaaagtcttcgagaagagcggaaggtcctgaagca
tattctggttctgcttcgcatactgagaaagacaatttgaaaagcatgtacaacgaagca
tttgttttctgtgagaaagtcaaggagagattatgcagccaagatgattatcagacgttc
ttgaagtgcctcaatatatttagcaatggaattatccaaaccaagcaactgcagaatttg
gtttctgatcttcttgggaaataccctgatctcatggatgagttcactcagttctttgag
cgttgtgaaagtattggtattcaaaatggatttcaacaccttgctggtgctatgagcaaa
aaatcatttagtagcgacgaacaggcatccaggtcaatggaggtggaagaaaaggaaaga
gaacacaagcctgacctcgaggttgttaatgaaacagagcaatataaggagtacgttgga
aaatctattcaagagcttgatctatctaattgcgagtgttgcactcctagctaccgacta
ctgccttcggattatccggtacgaactgccagtcagaggtcggagctaggatctgaagtt
ttaaatgatcgctgggtgtctgtcacttcaggaagtgaagattattcttttaagcacatg
cgcagaaacccatatgaagagatcttgttcagatgcgaagatgatagatttgagttggac
atgcttttggaatctgtgagttctgcggtcagaagtgctgaaaatttgttgaacatcatc
acagagaagaaaattactttctctggctccttcaggatcgaagatcacttcacggccctg
aacttaaggtgtattgagcgactttatggcgagcatggtcttgacgtgatagacatatta
cataagaatccagccactgcacttcctgtaatcttaactcgtttgaagcagaaacaagat
gaatggaagaaatgccgtgatgattttgataagatctgggcaaaggtatatgcgaaaaac
cattacaaatcacttgatcatcgcagtttctacttcaagcaacaagattcaaagaactcg
agtgccaaatcattggtggctgaaattaaggagctaaaagagaagactcagaatgaggat
gatattctgctgtctatttctgctggttacaggcaacccataaatcctaatcttgactac
gagtatttcagccgagatattcatgaagacctgtacaaactagtccatttttcatgcgag
gagttatgctctacaaaagaacagctcagcaaagttctgaggctttgggaaaatttcctt
gagccagtgctgggcgttcctcccagggccaagggcacagatcctgttgaagatgttccc
aagactcttgatgtgaatcacagcacttcgactaatgaggaggctaatgggagttgtgga
gcagacacagcaacgctagcttccaggaaactaatatctgttgccaacggagatcagaat
gcttcgtctggggcatccaatcttggtgagattggtttgttaaataaggattcgacaggg
aaagaagatcttcaagatgctgatacagccgacggagatggtgttacctcttctgctgta
aaactccaaaaagaacatgagactggaaatagagctgatcaaagatctgaaatgccgatt
ccaatggatatcaatgaaagagcatccacctcgagtttatcaaccccaagtggagaaaac
aatcattgtgtactagaaaaggaagatctggcaggctcacatgagattcaagccaaacca
agcaactctttgagtgatattcatcgcattaaaacttctccttcgacccaggcaggtgat
gttggcaaattaatagctttggcaagtggaataagatcagattcttctacggataatatg
aattctgatgaacccgaaggtccgctcacatttgagaaggaggaaggtgaactctcacct
aatggtgatttcgaagacaacgttggtcttcatgaagatcttggggtgaagtccacttct
aaacccgaaaatttagcagatgctgaagtagagaatgaggatgaggatagtgaaaatgct
tcagagggtggtgaagaatgttcacatgatgaaaatagagaggaggaatctggtgagcat
gatgaggttgatggtaaagctgagagtgagggagaagcagaggaagtggactcgcatatc
ttagcaggagacactgagctgcttcgccagtccgaacgtgttctcttgtctgccagacct
ctttcaaagcatgtagcagcggttttacgcgacgggatgactaaagatatccgagttttc
tatgggaatgacgacttttatgtcctctttaggcttcatcaaattctttatgagaggatt
ttgtctgcgaaaaggaattgctcaggcgatgaactgaaatcgaaaaactcaaaggatacc
gattcgctagatccttatgcgaggtttatgaagggattgtatggtttgcttgatggatca
gttgaaaatactaagtttgaggatgagtgcagagctattttcggaaatcaatcatatgtg
ttattcacgctgaacaaagtgatatacaaattggttaaacagcttcaagctgttgtagcc
gatgagatggacaacaagctaattcagttgtacgagtatgagaaatcccggaaacctgga
agggttattattgactcggtgtattatgaaaatgcgagggtcctccttcacgacgaaaat
gtttaccggttggaatgttcatcctcgccatctcgtttatcgatccaacttatggacaac
atagtcgagaaaccagaaccatatgcagtttctatggatcccatgtttgcaagttactta
caaactgaatttctttccacctcgcgagagaaaaaagaggagggacataacattttgttg
cgaaggaaccggcgtccatactcgggcttggatgatcttgaagcactctgtaaagccatg
gaaggtgttgaagtagtaaatggcttggagtgcaagatgtcttgctcttcttacaaggtt
tcgtacgtcttggacacagaggatttcttccacaggaagaagaagaaaaagaagatcgaa
cacatatcgcagcagcgtaacaaagatagagtagaaaggttccataggtttctctcagct
tcaagatga
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