Brassica oleracea (wild cabbage): 106343536
Help
Entry
106343536 CDS
T04124
Name
(RefSeq) rhamnogalacturonate lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106343536
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106343536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarbopepD_reg_2
EMC7_beta-sandw
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
106343536
NCBI-ProteinID:
XP_013638233
UniProt:
A0A0D3A5Y8
LinkDB
All DBs
Position
C1:11688658..11692205
Genome browser
AA seq
645 aa
AA seq
DB search
MSDQSSVHLDVKDNHVVMKNGIVEVTISKPDGFVTGISYHGVNNLLESHNEDYDRGYWDL
VWSEYGTPGTTGNSERIKGTSFQVVLENEELVEISFTRKWDSSLKDHFAPINVDKRFIMR
KDVTGFYSYGIFEHLAEWPAFNLPQTRIVYKLRKDKFRYMAVADNRQRKMPLPEDRLGKR
GRPLAYPEAVLLVHPVEEEFKGEVDDKYEYSCENKDLKVHGWISHNLDLGCWQIIPSNEF
RSGGLLKQNLTSHVGPISLAMFISAHYAGEDMVMKVKAGESWKKVFGPVFTYLNCLPDQT
SDPLSLWQDAKNQMLIEVQSWPYGFPASEDYALSDKRGCINGRLLVRDKSLSDELLPANG
AFIGLAPPGEVGSWQTESKGYQFWTEADADGYFTINNIREGEYNLNAYVTGWIGDYQYEE
LITITAGCDIDISSIVYEPPRDGPTVWEIGIPDRSAAEFFVPDPNPKYINKLYIGHPDRF
RQYGLWERYTELYPKEDLVFTIGVSDYQKDWFFAHVTRKAGDDTYEKTTWQIKFKLEKVQ
ENSTYKLRITLATANVAELQVRMNEDESEKSLIFTTGVIGHDNTIARHGIHGLYRLYNVD
VPSEKLLEGDNTLFLTQAMTTVGAFNGLMYDYIRLEEPCLASNFH
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaccaaagttctgttcacttggatgtcaaagacaaccatgtggttatgaagaat
ggtatagtcgaagtgaccatatcaaaaccagatggttttgtcactggaatctcttaccat
ggtgtcaacaatctactagaaagtcataatgaagactatgatcgaggttactgggacctt
gtttggagcgagtatggaacgcctggaaccacaggaaactccgagcggatcaaaggcaca
agttttcaagtagtactggaaaatgaggaactggtagagatatccttcacaaggaaatgg
gattcttctctcaaagaccattttgctcccattaatgtcgacaagaggttcataatgcgt
aaagatgttactggattttactcatacggaatattcgagcatctagctgaatggccagct
tttaacttgccccagacaaggattgtttacaagcttcgtaaagacaagtttcgatatatg
gcagttgctgacaacaggcagaggaaaatgcctcttccagaagatagattgggtaaaaga
ggaagacctttggcttatcctgaagctgttcttcttgttcatcctgttgaagaagagttc
aaaggagaggttgatgacaagtatgagtattcatgtgagaacaaagatcttaaagtgcat
ggatggatctcacataacttggatttgggttgctggcaaatcattcctagcaatgagttc
agatcaggtggcttgttgaaacagaaccttacttctcatgttggtccaatcagtctcgct
atgtttataagtgctcattatgcgggtgaggacatggtgatgaaggtaaaagcaggggag
tcatggaagaaggtgtttggtcctgttttcacttaccttaattgtttgcctgaccaaacc
tctgatcctctttcactatggcaagacgctaaaaaccagatgttaattgaagtccaaagc
tggccttacggtttccccgcttcagaagactatgcattgtctgataagcgtggttgcatc
aatggtagattactagtacgagacaagtcccttagtgatgaacttttaccagcgaatggt
gctttcataggtttggctccaccaggagaggttggatcttggcaaacagaatctaaagga
tatcagttctggacagaagcagatgcagatggttatttcaccataaataatatccgagaa
ggtgaatataatctcaatgcttatgtgacaggatggattggagactatcaatacgaagaa
ctgattaccatcactgcaggctgcgacattgacattagcagtatcgtttatgaaccgcca
cgagatgggccaacggtgtgggaaataggaatccctgaccggtcggcagctgagttcttt
gttccagacccaaatcccaaatacatcaataagctatatattggtcatcctgacaggttt
aggcaatacgggctatgggaaagatacacagaactatatcctaaggaagatctggtgttc
accattggcgtcagtgattaccaaaaggattggttctttgcacacgttactaggaaagca
ggagatgacacatatgaaaaaacgacgtggcaaataaaattcaagctcgagaaggtgcag
gaaaacagcacatacaaacttaggatcacactagcaaccgcaaatgtagcggaattacag
gtgaggatgaacgaggatgagagtgaaaagagtttgattttcacaactggtgtaatagga
cacgacaacacgatcgcaagacatgggatacatggactctatagactttataatgtggac
gtaccaagtgagaagcttctggaaggagacaacactttgttcttgacacaagccatgact
accgttggggcttttaatggccttatgtatgactatatccgccttgaagagccttgttta
gcttcgaactttcactaa
DBGET
integrated database retrieval system
