Brassica oleracea (wild cabbage): 106343980
Help
Entry
106343980 CDS
T04124
Name
(RefSeq) uncharacterized protein LOC106343980
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106343980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106343980
03110 Chaperones and folding catalysts [BR:
boe03110
]
106343980
03029 Mitochondrial biogenesis [BR:
boe03029
]
106343980
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
boe04147
]
106343980
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
106343980
Messenger RNA biogenesis [BR:
boe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
106343980
Chaperones and folding catalysts [BR:
boe03110
]
Heat shock proteins
HSP60 / Chaperonin
106343980
Mitochondrial biogenesis [BR:
boe03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
106343980
Exosome [BR:
boe04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
106343980
Exosomal proteins of other body fluids (saliva and urine)
106343980
Exosomal proteins of breast cancer cells
106343980
Exosomal proteins of colorectal cancer cells
106343980
Exosomal proteins of bladder cancer cells
106343980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
APG6_N
DUF3153
Motif
Other DBs
NCBI-GeneID:
106343980
NCBI-ProteinID:
XP_013638800
LinkDB
All DBs
Position
C5:complement(14188100..14192802)
Genome browser
AA seq
972 aa
AA seq
DB search
MSLRGVCGVVASLGLCFFRVEHSKLKRSMDQILALKEKLQNAKLMGMQKEDEKLRRGMES
KFPSTNTLCNQLTETLQHLASQIQQAEKDKERFEFKFSTSAQAINSLKQQMKDLSVKLSA
SEENIKSREKELEELQLEKGQKENSYQNEQCRTASFSNEKDAMINNSDAAIAEAKLNIEN
LNFQIEKVRLELTSKEDEGKYLVGVKEKLEQENMNIQLSADNLSEYIEAMIRHCRDIIKD
DKVTETIARDDDDVHIYSSGEGDTSGDDDYDDDDEEERDVNSKKGIDDQCEERAWKRSAH
LRSVSSSSVGAKEDATDTDPEGYRGFVPCPERSDILEILAARPDNLANYTALPSTLPSRI
SLYYAEMCLSEERFELLKKSEPQGQIGVSDTSGRLYLFWTPRPLDRKHVFKKRQVERREV
VAGYIRDQLFHALCWAYSLCDMVSASLVLHGWEKEFIPLCPRYLCEKVRPDLYGKDLKRG
ADLSSSAAHSCYGLSLEDGLAYVQDAGIPKEKNPTFNCNFKRASDPEEDLYRITDVFKYE
TMEQALVRLKSHPVAAKLTLFEGWSSDRIYRGPSKKGAGYIGEHEVLMLDCVLMDGEMVV
RCKSSNGERIGVLGYIFVSLEVMFLLAGKDDSRFCFKEPQYLINGFFSIGMDTGPLGLQF
REKPNRKKRNLKKFKVVLEQITTDSESSELGMMRTEHGSMIAEAMSRVGRKETSTIVGDG
TTQEAVQKHLTQIKNLIEQAEQDYEKEKLSERIATLSGGVAVIQVGAQTETELKDKNLIE
QVEQDYEKEKLNARIAKLSGRVAVIQVGAQTEPELKEKKLRVEYALNAKKAAVEDGIVVG
GGCTLLCLASKVDTIKAALDDDEEKVGTDIVKRALSYPLNPVAKNAGVSGSIVSEKVLSN
ENVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVP
TGNPMDNSGNGY
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgagcttaagaggtgtgtgtggtgttgttgctagcctaggattgtgcttcttcagagtc
gagcactctaagctgaaaagatcaatggatcaaatacttgctttaaaggagaaactgcag
aatgctaagctcatggggatgcaaaaggaggatgaaaagcttcggagagggatggagtcc
aaatttccttcgactaacactctgtgtaatcaacttactgagactctgcagcacttggct
tctcagattcaacaagcggagaaggataaggagcgttttgagttcaagttctctactagt
gcgcaagcaattaactctttgaagcagcaaatgaaagatctatctgtaaaactgagtgct
tctgaagaaaacatcaaaagccgagagaaggaactagaagagctacaactcgagaaagga
cagaaagaaaactcttaccaaaatgaacagtgtagaactgccagtttctcaaacgaaaaa
gatgctatgataaataattctgacgcagctatagccgaagcaaaactcaacattgagaat
ttgaacttccaaattgagaaggtgaggcttgagttaacatcaaaagaagatgaaggcaaa
taccttgttggcgtcaaggagaagcttgaacaagagaatatgaatattcagctgagtgct
gataatctttctgagtacattgaagccatgatcaggcattgcagggacattatcaaggac
gacaaggttactgaaaccatagccagagacgacgatgatgtgcacatctattcttctgga
gaaggagacacctccggggatgatgattacgatgatgatgatgaagaagagagggatgta
aacagcaagaaaggaatagacgaccagtgtgaagagcgtgcatggaaacgaagtgctcat
ctcagatcagtttcatcaagctctgttggggcaaaagaagatgcaaccgatactgatcca
gaaggatacagaggttttgtcccatgccccgaacgttctgatatactagagatacttgcc
gcccgtcccgacaatttagctaactatactgccctgccgtctaccctgccgtcccgaatt
tctctttactatgcagagatgtgtctcagtgaggagagatttgagctcctaaagaaatca
gaaccccaaggtcaaataggggtttctgatactagtggccgactgtatttgttctggacg
ccaaggcctctagatcgaaagcatgtattcaagaaaagacaagtggagaggcgggaagtg
gttgccggctacattcgagatcagttatttcatgctctgtgttgggcctattccttatgc
gacatggtaagtgcttctttggtgcttcacggttgggagaaggaatttataccgctgtgt
ccgagatacttgtgcgagaaggttcgtccggacctgtatggaaaagatttaaaaagaggt
gcagatttaagtagttccgcagcccatagttgctatggtctgtctttggaagacgggttg
gcgtatgtgcaggatgctggcatacccaaagagaagaatcctacctttaactgcaatttc
aaacgggcatctgatcccgaggaagatttgtaccgcatcaccgatgtctttaaatatgaa
acaatggaacaagccttggtgcgccttaagagtcatcctgttgctgcaaaactgacgtta
ttcgagggatggagcagtgacagaatatatcgaggccctagtaagaaaggcgctggatac
attggtgaacacgaggtgttgatgctcgactgtgtcctaatggatggtgaaatggttgta
cgttgcaaaagtagcaatggtgagcgtattggagttttgggatacatatttgtttccctt
gaagtgatgtttctccttgccggtaaagatgactccagattctgcttcaaagaacctcaa
tacctcatcaatggtttcttctccataggcatggatacaggtccgctgggattacagttc
agagagaagcccaaccgcaaaaagagaaacctcaagaagtttaaggttgtacttgaacag
ataacaactgatagtgagtcatcggaactagggatgatgagaacagaacatggaagtatg
attgctgaagcaatgagcagagttggaaggaaggagacttcgaccattgtgggtgatggg
accacacaggaagcagtgcaaaagcatcttacacagattaagaatcttattgagcaagcg
gagcaagattacgagaaggaaaaactgagtgagagaatagcaacgctttctggtggagtt
gctgtgattcaggtcggagcacaaacggagacagaactcaaagataagaatcttattgag
caagtggagcaagattatgagaaggaaaaattgaatgcgcgaattgcaaagctttctggt
cgagttgctgtgattcaggtcggagcacaaacggagccagagctcaaagagaaaaaactg
agagttgaatatgctcttaatgctaaaaaggctgctgttgaggacggtattgtcgttggt
ggtggttgtactctgctttgccttgcttccaaggttgataccattaaagccgcccttgac
gatgatgaagaaaaggtcggaacagacatcgtgaaaagagcacttagttaccctctaaac
ccggttgctaagaatgctggagtcagtggaagcatagttagcgagaaggtgctttccaac
gagaacgttaagttcggttacaatgctgcaactggcaagtacgaagatttgatggctgca
ggaatcatcgatccaacaaaggttgtgagatgttgcttggaacacgcagcttcggtggca
aagacattcttgatgtcagactgtgttgttgttgagatcaaggaacctgagccagttccc
acaggcaacccaatggacaactcaggaaatggatactga
DBGET
integrated database retrieval system
