Brassica oleracea (wild cabbage): 106344572
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Entry
106344572 CDS
T04124
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106344572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106344572
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106344572
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
106344572
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
106344572
NCBI-ProteinID:
XP_013639383
UniProt:
A0A0D3AF40
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Position
C1:complement(41576080..41577916)
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AA seq
288 aa
AA seq
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MVGVSVGEQQFIKGGIAQDLRTDGRKRLTYRDIYVETGVIPQANGSARVRIGGTDVIASV
KAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQICLLGGKSGAGA
GINLSSLLIKEGRVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVQVSAEVADD
EQPEIDISDEEYQQFDTSSVPVIVTLTKVGNHYIVDATAEEESQMSSAVSISVNRGGHIC
GLTKRGGSGLDPSVILDMISVAKHVSETLMNNLDSKISAAEACEDDES
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggtgggtgtttctgttggggagcaacagtttattaaaggtgggattgctcaggatctt
cgaactgatggtcggaaaagattgacttaccgtgacatctacgtcgaaaccggcgttatt
ccacaggctaatggttcagcgagagttagaataggtggaactgatgtcattgccagtgta
aaggctgagattgggaggccaagttctctgcagcctgataaaggaaaggttgctgttttc
attgattgcagtccaaccgcagaacctaccttcggggggagaggaggtgaggagttgtct
tctgagcttgctttggctcttcaaatatgtcttcttggtggcaaaagtggagcaggggct
ggtataaatctatcttcgcttttgatcaaagaaggaagagtctgctgggacctttatata
gatggccttgtcattagttcagatgggaatctattggatgcactgggtgctgccatcaag
gctgctttaacgaacacagctataccaaaagtccaagtttcagctgaagtggcggacgat
gagcagccagagattgacatcagcgacgaagagtatcaacagtttgacacttccagtgtc
ccagtcatagtcacgttaactaaagtggggaatcattacattgttgatgcaacagcggaa
gaggagtctcagatgagctcagctgtttctatatcagtgaaccgtgggggacatatctgt
gggttaaccaaaagaggcgggtctggtttagacccgagcgtcatcctcgacatgatctct
gtggctaagcatgtgtcagagactctgatgaacaatcttgattctaagatttcagctgca
gaggcctgtgaagacgatgagtcttga
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integrated database retrieval system
