KEGG   Brassica oleracea (wild cabbage): 106344606
Entry
106344606         CDS       T04124                                 
Name
(RefSeq) putative CCR4-associated factor 1 homolog 4
  KO
K12581  CCR4-NOT transcription complex subunit 7/8
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106344606
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106344606
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106344606
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     106344606
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 106344606
NCBI-ProteinID: XP_013639410
LinkDB
Position
C5:complement(15456165..15459355)
AA seq 302 aa
MRGCIPTRRPARLITVNFKDFDARTDACNEKSIEFLRRNGLNFKKIRQEGVGIEEFFKEF
GQILKDVDKKLKWVSFDGSYDLAYLVQGLTGRKPLPETLEAFNKTVEETLGLTFDVKKIA
VDCKGVSARYGLQRIADDLHIKRVGDAHHAGSDSELTARVFTDLIFSISKEQQREREEEK
QNEERMKRAMHIMHEAEEAFVMERRGYEKVQPRCGYLPVLHPQPRPVVYHPYPPQFAGYF
CLASFDYWVGTVIRLLEIKDDLIAYRTNRCQLSFILRVSLCQLSFCTHQTVTSLVPIVCL
VI
NT seq 909 nt   +upstreamnt  +downstreamnt
atgagagggtgtataccaacaagaagaccggccagattgatcacggttaatttcaaggat
tttgatgcgagaaccgatgcttgtaacgagaagtcgatagagtttcttagacgcaacggt
ctcaatttcaagaaaatcagacaagagggagtggggatcgaagagtttttcaaagagttc
ggtcagattctcaaagacgtggacaagaagttgaagtgggtttcgttcgacggttcgtac
gacttagcgtatctggttcaaggcctgaccggaagaaaaccactgcccgagactttagaa
gcttttaacaaaaccgttgaggaaactctagggcttacttttgatgtcaagaagattgcg
gttgattgcaaaggtgtgtctgcccgctacggtttgcagagaatagcagacgatcttcac
atcaaacgtgtgggtgatgcgcaccatgccggttccgacagcgagctcactgcccgagtg
tttactgacttgattttcagcatatcgaaggagcaacagagagagcgtgaagaggagaaa
cagaatgaagagcgtatgaaacgtgctatgcatattatgcacgaagccgaagaagctttt
gtgatggaaagacgtggttatgagaaggtacagccaagatgtggttacttaccggtactg
catccacaaccaagaccggttgtgtaccatccttacccaccacagtttgctggctacttt
tgtttggcttcctttgactattgggttgggacagtgataagactcttggaaattaaagac
gatcttattgcttatcgtaccaaccgttgccagctcagcttcattctaagagtctccttg
tgccagctcagcttctgtactcatcagactgttacatctctggtgcccatcgtttgcttg
gtcatctaa

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