Bosea sp. F3-2: FQV39_01195
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Entry
FQV39_01195 CDS
T06223
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bof
Bosea sp. F3-2
Pathway
bof03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FQV39_01195 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bof03021
]
FQV39_01195 (rpoC)
03400 DNA repair and recombination proteins [BR:
bof03400
]
FQV39_01195 (rpoC)
Enzymes [BR:
bof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FQV39_01195 (rpoC)
Transcription machinery [BR:
bof03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FQV39_01195 (rpoC)
DNA repair and recombination proteins [BR:
bof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FQV39_01195 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_RND
BSH_YknX
RnfC_N
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QEL21338
LinkDB
All DBs
Position
247552..251736
Genome browser
AA seq
1394 aa
AA seq
DB search
MKQEVMNLFGQQPVQQAFDAIKISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKFKGVICEKCGVEVTLARVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLMDMPLKDLERILYFESYVVIEPGLTPLKDRQLLSEEEYVRAQEEYGADTFTA
MIGAEAIREMLRALDLDQINADLKHEIATTTSELKPKKLMKRLKIIEAFQESGNKPEWMV
MTQIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PEMKLHQCGLPKKMALELFKPFIYARLDAKGYSTTVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSLVSDGEPGQGKAFGDFGELEHALH
EKVVTLHSKIKYRWTGVGHDGKPYTKIYDTTPGRVILSTALPEHPAVSFDVVNKLMTKKE
ISGMIDAVYRGCGQKESVIFCDRVMGLGFKHAFKAGISFGKDDMVVPENKWQIVDTTRAL
AKDYEQQYQDGLITQGEKYNKVVDAWAKCSDKLAQEMMARISTVQKDETGRDKQINSIYM
MSHSGARGSPAQMRQLAAMRGLMAKPSGEIIESPIISNFKEGLDVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDAIISEVDCGSDNGIKMRAIVDAGQVVASLGVRILGRSA
AEDVTDIDGNVLVPKGTMIEESHIEKINAAGVQEVKIRSVLTCETKNGVCATCYGRDLAR
GTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATIADQSFVESNFEGTVKMRNRNVA
RNSDGDLIAMARNIAIVIVGPDGAERAVHRVQFGSKLRVDEGDKVKRGQRLIEWDPYSRP
ILAEVDGKVGYEDLVDGMSMTETTDEATGISKRVVIDWRGSARTADLKPAMTIAGSDGKI
AKLARGGDARYILPVDGIISVEPGSSVKAGDVLARVSTDSAKTRDITGGLPRVAELFEAR
RPKDAAIIAEKSGVIGFGKDYKNKRRVTLTPHDGSDGVEYLIPKGKHIHLQDGDVVEVGD
YILDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVGINDKHIEVIVRQMLQKVEITE
SGDSDILTGDQVDRVELEEVNAKLREEGKKPASGVPVLLGITKASLQTRSFISAASFQET
TRVLTEAAVNGKSDLLEGLKENVIVGSLIPAGTGAQVARIKQVATRRDDLIVGQKADAAA
KAAKEAAAVLPAAE
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaagaggtcatgaaccttttcggccagcagccggtccagcaggccttcgacgcg
atcaagatctcgatcgcgagcccggagaagatcctgtcctggtcctatggcgagatcaaa
aagccggagacgatcaactaccgcacgttcaagccggagcgtgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
ttcaagggcgtcatctgcgagaagtgcggcgtcgaagtcacgctcgcccgcgtccggcgc
gagcgcatgggccatatcgagctcgccgctccggtggcgcatatctggttcctgaagtcg
ctgccctcgcgcatcggcctcctgatggatatgccgctcaaggacctcgagcgcatcctc
tacttcgaaagctacgtcgtcatcgagccgggcctgaccccgctcaaggaccgtcagctg
ctgtcggaggaggagtacgtccgggctcaggaagagtacggcgcggacaccttcaccgcc
atgatcggcgcggaagccatccgcgagatgctgcgcgcgctcgacctcgaccagatcaac
gccgatctcaagcatgagatcgcgacgacgacgtcggagctgaagcccaagaagctgatg
aagcgcctcaagatcatcgaggccttccaggagtcgggcaacaagccggaatggatggtg
atgacccagattccggtcatcccgccggatctgcgtccgctcgtgccgctcgacggcggc
cgcttcgcgacctcggacctgaacgacctctatcgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatcgagctgcgcgcgccggacatcatcatccgcaacgagaagcggatg
ctgcaggagtcggtcgacgccctgttcgacaacggccgtcgcggccgcgtcatcacgggt
gccaacaagcgcccgctgaagtcgcttgccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgtgtcgactattccggccgctcggtcatcgtcgtcggc
ccggagatgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctatgcgcggcttgacgccaagggctactcgaccacggtcaagcaggccaag
aagctcgtcgagaaggagaagccggaggtctgggatatcctggacgaggtcatccgcgag
catccggtgatgctgaaccgcgccccgacgctgcaccgcctcggcatccaggccttcgag
ccggtgctgatcgagggcaaggcgatccagctgcatccgctggtctgcgccgccttcaac
gcggacttcgacggcgaccagatggccgtgcacgtcccgctgtcgctcgaagcgcagctg
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcacccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctctactacctctcgctcgtctcggac
ggcgagccgggccagggcaaggccttcggcgatttcggcgaactcgagcacgcgctgcac
gagaaggtcgtaacgctgcattcgaagatcaaataccgctggaccggcgtcggccatgac
ggcaagccgtacacgaagatctacgacaccacgccgggccgcgtgatcctctcgaccgcg
ctgccggagcacccggccgtgtccttcgacgtcgtcaacaagctgatgacgaagaaggag
atctccggaatgatcgacgccgtctatcgcggctgcggtcagaaggagtcggtgatcttc
tgcgaccgcgtcatggggctcggcttcaagcacgccttcaaggccggcatttccttcggc
aaggacgacatggtcgtgccggagaacaagtggcagatcgtcgacacgacccgcgcgctc
gccaaggactacgagcagcagtaccaggacggcctgatcacccagggcgagaagtacaac
aaggtcgtcgacgcctgggcgaagtgctccgacaagctcgcccaggagatgatggcccgc
atctcgaccgtccagaaggacgagaccggccgcgacaagcagatcaactcgatctacatg
atgtcgcactccggcgcccgcggttcgccggcgcagatgcgccagctcgccgccatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgagtcgccgatcatctcgaacttcaag
gaaggcctcgacgttctcgagtacttcaactcgacccacggcgcccgtaagggcctcgcc
gacacggcgctcaagacggccaactccggctatctgacccgccgtctcgtcgacgtggcg
caggacgcgatcatctccgaggtcgattgcggctcggacaacggcatcaagatgcgcgcc
atcgtcgatgccggtcaggtcgtcgcctcgctcggcgtgcgcatcctcggccgttcggcg
gccgaggacgtgaccgacatcgacggcaacgtcctggtgccgaagggcacgatgatcgag
gagagccatatcgagaagatcaacgccgccggcgtccaggaggtgaagatccgctcggtt
ctcacctgcgagaccaagaacggcgtctgcgcgacctgctacgggcgcgatctggcccgc
ggcacgcccgtcaacatgggcgaggctgtcggcgtcatcgcggcgcagtcgatcggcgag
ccgggtacgcagctcaccatgcgcaccttccacatcggcggcgcggcgaccatcgccgac
cagtccttcgtcgagtcgaacttcgaaggcacggtcaagatgcgcaaccgcaacgtcgcg
cggaactcggacggcgacctcatcgccatggcgcgcaacatcgccatcgtgatcgtcggt
ccggacggcgccgagcgcgcggtccatcgcgtccagttcggctcgaagctgcgcgtcgac
gagggcgacaaggtcaagcgcggccagcgcctgatcgagtgggacccgtactcccgcccg
atcctggcggaggtcgacggcaaggtcggctacgaggacctcgtcgacggcatgtcgatg
accgagacgaccgacgaggcgaccggcatctccaagcgcgtcgtgatcgactggcgcggc
tcggcccgtacggccgacctcaagccggcgatgacgatcgcgggttcggacggcaagatc
gcgaagctcgcccgcggtggcgatgcccgctacatcctgccggtcgacggcatcatctcg
gtggagccgggttcctcggtcaaggctggcgacgtgctggcgcgtgtctcgaccgactcg
gccaagacccgcgacatcaccggcggtctgccgcgcgtcgcggagctgttcgaggcgcgt
cgtccgaaggatgcggcgatcatcgccgagaagtcgggcgtcatcggcttcggcaaggac
tacaagaacaagcgccgcgtgacgctgacgccgcatgacggctcggacggggtcgagtac
ctgatcccgaagggcaagcacatccatctccaggacggcgacgtcgtggaggtcggcgac
tacatcctcgacggcaatccggccccgcacgacatcctggcgatcaagggcgtcgaggag
ctggcggcttacttggtgaacgagatccaggaggtctatcgcctccagggcgtcggcatc
aacgacaagcacatcgaggtcatcgtccggcagatgctgcagaaggtcgagatcacggag
tcgggcgacagcgacatcctgaccggcgaccaggtcgatcgcgtcgagctcgaagaggtc
aacgcgaagctgcgcgaggagggcaagaagccggcttccggcgtgccggtcctgctcggc
atcaccaaggcctcgctgcagacccgctccttcatctcggcggcgtccttccaggagacc
acccgcgtcctcaccgaggcggcggtcaacggcaagtcggacctgctcgaggggctcaag
gagaacgtcatcgtcggctcgctcatcccggccggcaccggcgcccaggtcgcccgcatc
aagcaggtggctacccgccgcgacgatctcatcgtcggccagaaagcggatgcggcggcc
aaggccgccaaggaagctgctgccgtgctccccgccgccgagtaa
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