Bosea sp. F3-2: FQV39_03495
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Entry
FQV39_03495 CDS
T06223
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bof
Bosea sp. F3-2
Pathway
bof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FQV39_03495 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bof03400
]
FQV39_03495 (mfd)
Enzymes [BR:
bof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FQV39_03495 (mfd)
DNA repair and recombination proteins [BR:
bof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FQV39_03495 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_16
MFD_D3
UB2H
RecG_dom3_C
SecA_DEAD
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QEL21743
UniProt:
A0A5C1AUF5
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All DBs
Position
complement(722649..726197)
Genome browser
AA seq
1182 aa
AA seq
DB search
MSIPPPSQIAKPQLDRILDALNRGDKPTLAGVPDGFDAVVLADLTRARAKKAEGAAMLVF
IARDGQRLQVMENALQFVAPDLEVMSFPAWDCQPYDRVSPAPSIVAHRMTTLSRLAKTKS
GDRPRLLLTTVNAALQRVPAFGKVASESFSAAPGNMVDIEELARWLDINGYLRTSTVRET
GEFAVRGGIVDLFPPGMPAPIRLDFFGDTLESIRTFDPETQRTTGQLRGLDLVPMSEAQM
TSESIRRFRQSYISTFGTPGRDDMLYEAVSEGRRPAGLEHWLPLLAEKLDTLFTYLPDVP
LVLDHQAEDAVGERISLIKDYYDARKAALDQGGAGGIPYKPLPPDALYLSPADWRGVIDV
SGVASLTPFQLPDSEGKLILDLGGKQGRSFAAERAGESGSVFEAAVGHVRALEADGKRVI
LAAWSEGSRERLAHVLEDHGLKSVQMTGSLRAAFDLKPGTVALAVWGFESGFEAGRLAVV
GEQDILGDRLVRPRRKTRRPQDFIAELSSLAPGDLVVHVDHGIGRFIGLQSITAAGAPHD
CLEIHYAGDSKLFLPVENIELLSRYGSEDTEVQLDRLGGGGWQARKAKLKQRIREMASKL
IQIAAARALKDAPRLVPPDGVYDEFIARFPYEETEDQQNTIDAVLDDLAAGRPMDRLVCG
DVGFGKTEVALRAAFATALNGKQVAVVVPTTLLARQHYRNFADRFAGLPVKVGQASRFVG
STDLKAVKQGAKDGTMDIVVGTHALLGKGVDFKDLGLVIVDEEQHFGVAHKEKLKELRAE
VHMLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFVTPFDPLIVREALLRERYR
GGRSFYVVPRIEDIAEVKDFLDKQVPECKVGIAHGQMAAGTLEDVMTAFYEGQYDILLST
TIVESGLDIPSANTLIVHRADMFGLAQLYQLRGRVGRSKTRAYALFTVPANRKLTEQADK
RLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQQMLEEAVAALKA
GIEFETETQWSPAIQVGAPVMIPEHYVADLTLRLTLYKRLSTMDDDAELQSFGAELVDRF
GPLPEEVNQLLEIVAIKALCKRANVEKVEAGPKGIIVAFRNNEFANPEGLVGFVAKQGTL
AKVRPDMRVVFIDDFDTVEQRLKATRRLLTDLARIAERKKAA
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcccgcctccttcccagatcgccaagccgcagctcgatcgcatccttgatgcg
ctgaaccgcggcgacaagccgacgcttgccggcgtgcctgatggtttcgacgccgtcgtg
ctcgccgacctgacccgcgcccgcgccaagaaggcggaaggggcggccatgctcgtcttc
atcgcccgcgacggccagcgcctgcaggtgatggagaacgcgctgcagttcgtcgcgcct
gatctggaggtgatgagcttcccggcctgggactgccaaccctatgaccgtgtctcgccc
gcgccctccatcgtcgcgcaccggatgacgacgctgtcgcgcctcgccaagaccaagtcc
ggcgaccggccgcgcctgctgctcaccaccgtcaacgccgcgctccagcgcgtcccggct
ttcggcaaggtggcgtcggagagcttctccgccgcccccggcaacatggtcgatatcgag
gagctggcgcgctggctcgacatcaacggctatctgcgcacctcgaccgtgcgcgagacc
ggcgaattcgcggtgcgcggcggcatcgtcgacctcttcccgccgggcatgccggcgccg
atccggctcgacttcttcggcgacacgctggaatcgatccgcaccttcgatccggagacg
cagcgcaccaccgggcaattgcgcgggctcgatctcgtgccgatgtccgaagcgcagatg
acgagcgagagcatccgccgcttccgccagtcctacatctcgaccttcggcacgcccggc
cgcgacgacatgctctatgaggcggtcagcgaaggccgccgcccggccggtctggagcac
tggctgccgctgctcgccgagaagctcgacacgctcttcacctacctgcccgacgtaccg
ctggtgctcgaccatcaggccgaggacgcggtcggcgagcgcatcagcctgatcaaggac
tattacgacgcccgcaaggcggcgctcgatcagggcggggcaggcggcatcccgtacaag
ccgctgccgccggacgcgctctatctctccccggccgactggcgcggcgtgatcgatgtc
tccggcgtcgcgagcctgaccccgttccagctgcccgacagcgagggcaagctcatcctc
gacctcggcggcaagcagggccgcagtttcgcggccgagcgcgccggcgagtccggcagc
gtcttcgaggcggctgtcggccatgtccgcgcgctggaggccgacggcaagcgcgtcatc
ctcgccgcctggtcggaaggctcgcgcgaacgcctcgcccatgtccttgaggatcacggg
ctgaagagcgtccagatgactggctcgctgcgtgcggctttcgatctcaagcccggcacg
gtcgcgctcgcggtctggggcttcgagagcggcttcgaggctggtcgcctcgccgtcgtc
ggcgagcaggacatcctcggcgaccgcctcgtccgcccgcgccgcaagacgcgccggccg
caggattttatcgcggagctctcctcgctcgctccgggcgatctcgtcgtccatgtcgat
cacggcatcggccgcttcatcggcctgcaatcgatcacggcggccggcgcaccgcatgac
tgcctcgaaatccactatgccggcgattccaagctgttcttaccggtagaaaacatcgag
ctgctttcccgctacggctcggaagacaccgaggtccagctcgatcggctcggcggcggc
ggctggcaggcccgcaaggccaagctcaagcagcgcatccgcgagatggcgagcaagctc
atccagatcgcggccgcgcgcgcgctcaaggacgcgccacgccttgtcccgcccgacggg
gtctacgatgaattcatcgcccgcttcccgtacgaggagacggaggaccagcagaacacc
atcgacgcggtgctggacgatctcgcggccgggcgcccgatggaccggctcgtctgcggc
gatgtcggcttcggcaagacggaagtcgcgctgcgcgccgccttcgccaccgcgctgaac
ggcaagcaggtcgccgtcgtcgtaccgacgacgctgctcgcccgccagcactaccgcaat
ttcgcggatcgttttgccggcttacctgtgaaggtcgggcaggcctcgcgcttcgtcggc
agcaccgatctcaaggcggtgaagcagggcgcgaaggacggcacgatggacatcgtcgtc
ggcacgcatgcgctgctcggcaagggcgtcgacttcaaggatctcggcctcgtcatcgtc
gacgaggagcagcatttcggcgtcgcccataaggagaagctgaaggagctgcgcgccgag
gtgcatatgctgacactgtcggcgacgccgatcccgcgcacgctgcagcttgccatgacc
ggcgtgcgcgaactctcgatcatcgcgacgccgccggtcgatcgcctggcggtgcgcacc
ttcgtcacacccttcgacccgctgatcgtgcgcgaggcgctgctgcgcgagcgttaccgg
ggagggcggtcgttctacgtcgtgccgcgcatcgaggacatcgccgaggtcaaggacttc
ctcgacaagcaggtgcccgagtgcaaggtcggcatcgcgcatggccagatggcggcgggc
acgctggaagacgtgatgacggccttctacgagggccaatacgacatcctgctctcgacg
acgatcgtggagtcgggcctcgacatcccctccgccaacacgctgatcgtccaccgcgcc
gacatgttcggcctcgcccagctctaccagctcagggggcgcgtcggccgctcgaagacg
cgcgcctatgcgctcttcaccgtgccggccaaccgcaagctgaccgagcaggccgacaag
cggcttaaagttctgcagtcgctcgatacactcggcgccggcttccagctcgccagccac
gacctcgacatccgcggcgccggcaacctgctcggcgacgagcagtccggccatatcaag
gaagtcggctacgaactctaccagcagatgctggaggaggcggtggcggcgctcaaggcg
ggcatcgagttcgagaccgagacgcaatggtcgccggcgatccaggtcggcgcgccggtc
atgatccccgagcactatgtcgccgacctgacgctcaggttgacgctctacaagcgcctc
tcgaccatggacgacgatgccgagctgcagtccttcggcgccgaactggtcgaccgcttc
ggcccgctgccggaggaggtcaaccagctcctggagatcgtcgcgatcaaggcgctgtgc
aagcgcgccaatgtcgagaaggtcgaagcggggccgaagggtatcatcgtcgccttccgc
aacaacgaattcgccaatccggaagggctggtgggcttcgtcgccaagcagggcacgctg
gcgaaggtgcgccccgacatgcgcgtcgtcttcatcgacgatttcgacacggtcgagcag
cgcctgaaggcgacgcgccggctgctcaccgatctcgcccggatcgcagagaggaagaag
gcggcttga
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