Bosea sp. F3-2: FQV39_04175
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Entry
FQV39_04175 CDS
T06223
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bof
Bosea sp. F3-2
Pathway
bof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FQV39_04175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bof03019
]
FQV39_04175
03009 Ribosome biogenesis [BR:
bof03009
]
FQV39_04175
Enzymes [BR:
bof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FQV39_04175
Messenger RNA biogenesis [BR:
bof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FQV39_04175
Ribosome biogenesis [BR:
bof03009
]
Prokaryotic type
rRNA processing factors
FQV39_04175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QEL21862
LinkDB
All DBs
Position
878518..881298
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AA seq
926 aa
AA seq
DB search
MANKMLIDATHPEETRVVVVRGSRVEEFDFESASRKPLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEDEARAERDEERDEERREKRGRRDRRRGGD
RDHRAKKAAADETVSAEVEANGEDAGERVETDGKEAAMVNEGAPAFGEYFAPAVAESTTE
DAVENTAPLTFETVEAAAPADETSASTEDSEASETEARKPSEDEDSEDDENGDEAEEAPE
QLGGGDALDDMPERPQRHSRRQYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLSLAGR
YSVLMPNTGKGGGISRKITNAEDRKRLKEIAQELEVPEGMGLILRTAGASRTKVEIRRDY
EYLMRMWESVRELTLASVAPALVYEEGNLVKRSIRDLYNKDIDEVHVAGEEAYREAKDFM
RMLMPSHAKSVKPYREQTPLFASFGVESQLDAMFSNTVTLKSGGYLVINQAEALVAIDIN
SGRSTREHNIEDTALKTNLEAAEEIARQLRLRDLAGLIVIDFIDMEENRNNRAVEKKLKE
CLKDDRARIQVGRISAFGLLEMSRQRIRTGVLESSSVPCPHCAGAGMIRSTPSVALQILR
ALEETLIKSASHNLTVRTRPEVALYVLNQKRAHLTDLETRFAVAITISTDPNLLGTRYFE
VERGEFVGNEGRIIPTSFKAEAIASDVDDEALDAAAEAAALDAETGDNETTAGEAQGERG
EGDRDSRRRRRRRRRRRGGERDGQGQLLDAGQAGEGDEDEDGEDAAEPSVVEVVAEAMIE
SPASAEAAPEPVAEEAAPAEPAKPKRSRARKPKAEAAKEVEAEAETATAEVAPAEKPKRS
RSRKKVVPITEGGEAAAEAAPAPVEAQPEAVAQPAEEPTAPAEPAAVPEPAPAPAPAEEP
VAVVLTPADPSRPKRGGWWNRLAGRS
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaagatgcttatcgatgccacccacccggaggagacccgggtcgtggtggtc
cgcggatcgcgcgtcgaagagtttgatttcgaatccgccagccggaagccgctccgcggc
aatatctatctcgccaaggtgacccgcgtggagccgtcgctccaggcggccttcgtcgag
tatggcggcaaccgccacggcttcctcgccttttcggaaatccaccccgactattaccag
atccctgtcgccgaccgacaggcgctgatcgaggacgaggcacgcgccgagcgcgacgag
gagcgcgatgaggaacgccgcgagaagcgcggccgccgcgatcgccgccgtggcggagac
cgcgatcatcgcgccaagaaggctgccgccgacgagaccgtctcggccgaggtcgaggcg
aatggcgaggacgccggggagcgcgtcgagaccgacggcaaggaagccgccatggtcaac
gaaggcgcgccggccttcggcgagtacttcgctccggccgttgccgaatcgaccaccgag
gatgccgtcgagaacaccgcgccgctgaccttcgagacggtcgaggctgccgccccggcc
gatgagacttcggcttccacggaagattccgaggcttcggagaccgaggcccgcaagccc
tccgaggacgaggattccgaagacgacgagaacggcgatgaggccgaagaggctcccgag
cagctcggcgggggcgacgccctcgacgacatgccggaacgcccgcagcgccattcgcgc
cgccagtacaagatccaggaggtgatcaagcgccgccagatcatcctggtccaggtcgtc
aaggaagagcgcggcaacaagggcgcggcgctcaccacctatctgtcgctcgccggccgc
tattcggtgctgatgccgaacaccggcaagggcggcggcatctcgcgcaagatcaccaat
gccgaggaccgcaagcgcctcaaggaaatcgcccaggagctcgaggttccggaggggatg
ggcctgatcctgcgcacggccggcgcctcgcgcaccaaggtcgagatccggcgcgactac
gaatacctgatgcggatgtgggagagcgtgcgcgagctgacgctggcctcggtcgccccc
gcgctggtctatgaggagggcaacctcgtcaagcgctcgatccgcgacctctacaacaag
gatatcgacgaggttcacgtcgccggcgaggaggcctatcgcgaggccaaggacttcatg
cgcatgctcatgccgagccatgccaagagcgtgaagccctatcgcgagcagacccctctc
ttcgcgagcttcggcgtcgagagccagctcgacgcgatgttctcgaacacggtgacgctg
aagtccggcggctatctggtgatcaaccaggcggaagcgctggtcgcgatcgacatcaac
tcgggccgctcgacccgcgagcacaatatcgaggacaccgcgctcaagaccaatctcgaa
gcggcggaagagatcgcaaggcagctcaggctgcgcgacctcgccggtctcatcgtgatc
gatttcatcgacatggaggagaaccggaacaaccgggccgtcgagaagaagctgaaggag
tgcctgaaggacgaccgcgcccgcattcaggtcggccgcatctcggccttcggcctgctg
gagatgtcgcgccagcgcatccgcaccggcgttctggagagctcctcggtgccctgcccg
cactgcgccggcgccggcatgatccgctcgacgccgtccgtcgcgctgcagatcctgcgc
gcgctggaggagacgctgatcaagagcgcctcgcacaacctcaccgtccgcacccggccg
gaggtcgcgctctacgtccttaaccagaagcgcgcccatctgaccgatctcgagacccgc
ttcgccgtggcgatcacgatctcgaccgatccgaacctgctcggcacccgctacttcgag
gtcgagcgcggcgagttcgtcggcaatgaaggccggatcatcccgaccagcttcaaggcc
gaagccatcgcctccgatgtcgatgacgaggcgctggatgctgctgccgaggctgccgct
ctcgacgccgagaccggcgacaacgagacgacggccggcgaagcccagggcgaacgcggc
gaaggtgaccgtgacagccgccgccgccgccgtcggcgccgtcggcggcgtggcggggag
cgcgacggccagggccagctgctcgatgcgggccaggccggcgaaggcgacgaggacgag
gatggcgaggatgcagccgagccgagcgtcgtcgaggtcgttgccgaagcgatgatcgag
tcgcctgcctctgccgaggccgctccggagccggttgctgaagaggccgcccccgccgag
ccggcgaagccgaagcgcagccgcgctcgcaagccgaaggccgaggccgccaaggaggtc
gaagccgaggcggagaccgccacggccgaagtcgctccggcggagaaacccaagcgcagc
cgctcgcgcaagaaggtcgtgccgatcaccgaaggtggcgaagccgctgctgaagctgcc
ccagccccggtcgaggcccagcccgaagctgtggcccagcctgctgaggagccaaccgct
ccggccgagcccgccgcagtgcccgagcctgcgcccgccccggctccggccgaggaaccc
gtcgcggtcgtgctgaccccggccgatccgagccggccgaagcgcggcggctggtggaac
aggctcgccggccgctcctga
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