Bosea sp. F3-2: FQV39_18140
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Entry
FQV39_18140 CDS
T06223
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
bof
Bosea sp. F3-2
Brite
KEGG Orthology (KO) [BR:
bof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bof03019
]
FQV39_18140 (hrpB)
Enzymes [BR:
bof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FQV39_18140 (hrpB)
Messenger RNA biogenesis [BR:
bof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FQV39_18140 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QEL26657
UniProt:
A0A5C1B839
LinkDB
All DBs
Position
complement(3956006..3958510)
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AA seq
834 aa
AA seq
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MRAFDTALPIDAVLGDLAAALRARPNAVLVAPPGAGKTTRVPLALLDEPWTKGGKLILLE
PRRLAARGAANRMAQTLGERVGETVGLRVRLGSKIGPKTRIEVVTEGVFARMILDDPALE
GVAAVLFDEFHERSLDADFGLALALDAQGGLREDLRLLVMSATLDGARVAKLLGDAPVIE
SEGRAFPIETRYRGRDPLKRIEDQVTETIQLALNEQPGSQLVFLPGQGEIRRVEERLREK
LRDPAVELAPLYGALDQRDQDRAVLPAPLGKRKVVLATAIAETSLTIEGVRVVIDSGLAR
VPVYEPDIGVTRLETRRVSRAAADQRRGRAGRTEPGVCYRLWEEAATGALEAFARPEILS
ADLSPLLLDCAAWGVGDPTTLAFLDPPPAPALKEARALLGNIGALAADGRITPDGRALQS
LPLPPRLARMVVAAARFGQADAAAELAAVLVERGLGGDAVDLAERLERLSRERGGRAGDM
RRLAEGWARTAERSARKDRAEAGEPLSAGLLLAFAYPDRVAKARSPGSGQYLLANGRGGA
LEPSQRLAREPYIVVAEMTGAAQQARIMAAAAITEAEVAALVSHGLAPFAIMEREEANFD
RTARALRVRAVRRYGGLSLSERPLSVADTPENAEALAKGIASLDIGLLPWTKGQNQLRER
AAFLRKAEPEENWPDLSDEGLAREPELWLAPHLVGRASLASIQPSDLDAALASLLPWELK
RRLDAEAPTHFTAPTGSSLAVDYAAEAGPTISVRVQELYGLATHPALAGGRVPLVLELLS
PAHRPIQVTRDLPGFWRGSWATVKSEMKGRYPRHLWPDDPAAALPTTRAKPRGT
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccttcgacaccgccctcccgatcgatgccgttctcggcgatctcgctgccgcc
ctgcgggcgcggccgaacgccgtcctcgtcgcccctccgggcgccggcaagaccacgcgc
gtgccgctcgctctgctcgacgagccatggaccaagggcggcaagctcatcctgctcgag
ccgcggcgcctggcggcgcgcggtgcggcgaaccggatggcgcagacactgggagaacgg
gtcggcgagacggtcggcctgcgcgtgcgcctcggctccaagatcgggccgaagacgcgc
atcgaggtcgtcaccgagggcgtcttcgcccggatgattctcgacgacccggcgctggag
ggcgtcgcggccgtgctcttcgacgagtttcacgaacgctcgctcgatgccgatttcggc
ctggcgcttgcgctcgacgcgcagggcggcctgcgtgaggatctgcgtctcctcgtcatg
tccgcgacgctcgacggcgcgcgtgtcgcgaagctgctcggcgatgcgccggtcatcgag
agcgaggggcgcgccttcccgatcgagacgcgctatcgcgggcgcgatccgttgaagcgc
atcgaggatcaggtcacagagacgattcagctggcgctcaacgagcagccgggttcgcag
ctcgtcttcttgccggggcagggcgagatccgccgcgtcgaggagcgcctgcgcgagaaa
ttgcgcgatcctgcggtggaactcgcgccgctctacggcgcgctcgatcagcgtgatcag
gatcgcgccgtgctgccggcaccgcttggcaagcgcaaggtcgtgctggcgacggccatc
gcggagacctcgctgaccatcgagggcgtgcgcgtggtcatcgattccggcctcgcccgc
gtgccggtctacgagccggatatcggtgtgacccggctggagacccgccgcgtcagccgc
gccgcagccgatcagcgccgtggccgcgccgggcgcaccgagccgggtgtctgctatcgc
ctttgggaggaggcggcgaccggcgcgctcgaagccttcgcccggcccgagatcctctcc
gccgatctgagcccgctattgctcgattgtgccgcctggggcgtcggcgacccgacgacg
ctggctttccttgatccgccacctgcgcccgccctcaaggaagcccgcgccctgctgggc
aatatcggcgcgctcgctgccgatggccgcatcacgccagatggccgcgccctgcagtca
ctgcccttgccgccacggctcgcccgcatggtcgtggcggccgcacgtttcgggcaggcg
gacgccgccgccgagctcgccgccgtgctggtcgagcgcggtctcggtggcgatgccgtc
gatctggctgaaaggctggagcggctcagtcgcgagcgcggcggtcgggccggcgacatg
cgccgccttgctgaaggctgggcacgaaccgccgagcgaagcgctcgcaaggatcgggct
gaagccggcgaaccgctttcggccgggcttctgctcgccttcgcctatccggaccgggtc
gccaaggcccgctcgccgggctccgggcaatatctcctcgccaatggtcgtggtggcgcg
ctggaaccgtcgcagcgtctggcgcgcgagccctatatcgtcgtcgcggaaatgaccggt
gcggcccagcaggcccgcatcatggccgccgccgcgatcaccgaagccgaggtcgctgcg
ctcgtctcccatgggcttgcgccctttgccatcatggagcgggaggaggcgaattttgac
cgaacggcccgcgccctgcgggttcgcgcggtgcgccgctatggcgggctctctttgtcc
gagcggccgctctccgttgcggatacgcccgagaatgccgaggcgctggccaagggcatc
gcgtcgctcgacatcggcctcctgccctggaccaaggggcagaaccagctacgcgagcgc
gcagccttcctgcgcaaggcggaaccggaggaaaactggcccgacctgtcggacgagggg
ctcgcgcgggagcccgaactctggctggcgccgcatctcgtcggccgcgcctcgctcgct
tcgatccagccttccgatctcgatgccgcgctggcaagcctgctgccttgggagttgaag
cgccggctcgatgccgaggcgccgacccatttcaccgcgccgacaggttcgtcgctcgca
gtcgactatgcagcagaagccgggccgaccatttcggtgcgcgtgcaggaactctacggg
ctcgcgacgcatcctgccttggccggcgggcgggtgccgctggtgctggagctgctctcc
ccggcccatcggccgatccaggtgacgcgtgatctgcccggcttctggcgcggctcctgg
gccacagtgaaatcggagatgaagggacgctatccgcgccatctctggccggacgacccc
gccgctgccctgccgacgacgcgggccaagccacgcgggacgtga
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