Bombilactobacillus thymidiniphilus: MOO47_00780
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Entry
MOO47_00780 CDS
T08331
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bog
Bombilactobacillus thymidiniphilus
Pathway
bog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MOO47_00780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bog03019
]
MOO47_00780
Messenger RNA biogenesis [BR:
bog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MOO47_00780
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
SIS_2
DUF4453
ODP
Motif
Other DBs
NCBI-ProteinID:
UQS83771
UniProt:
A0ABY4PDH5
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Position
143633..145321
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AA seq
562 aa
AA seq
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MTLKINKDEVAVFAIGGLGEIGKNMYVIQYQNEIVIIDAGIKFPEDELLGIDYVISDYQY
LAQNRDKIKGLFITHGHEDHIGGIPYFLQKVPDVPIYAGPLATALIKGKLEEHGLLESTQ
MHVLQEEDIVNFEHLGVEFFRTTHSIPDTLGIAVHTPQGIIIQTGDYKFDLTPVGNQPAP
NLQKMAKLGSEGVLLLLSDSTNAEIPTFSKSERFVGNTIHQIVERIEGRIIFATFASNLY
RVSQAVDAAMQNGRKVAVFGRSMEQAIVNGRELGYLDIPDSEILDAADINKLPANKVMLL
CTGSQGEPMAALSRIANGTHRQITVQPGDTVIFSSNPIPGNTTSVNHLINELEEAGADVI
HGKVNNIHASGHGGQEEQKLMLRLIEPKFFMPIHGEYRMLKIHTELAQLCGVPEDHTFIF
ENGDVLALTKNSARKADHVPAGDVYVDGNGIGDISNVVIHDRQILSEEGLVIVVATIDYH
KGLVLSGPDILSRGFVYMRESGDLINQAQKRVFHTIKTHLDASDKVNEAVLKRDIIDNLQ
EFLFRRTERHPVILPMIISTQV
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgactttaaaaataaataaagatgaagtggcagtttttgctatcggcggtctcggtgaa
attggcaaaaatatgtacgtcatccaatatcaaaatgaaatcgtcattattgatgcagga
ataaagtttcctgaggatgagttattaggtattgactatgtaatttctgattatcagtac
ttagcacaaaatcgtgacaaaattaagggcttatttatcacccacggtcatgaagatcat
attggcggtattccctactttttacaaaaagtgcctgatgtacctatctatgctggtcct
ttggcaactgctttaatcaagggcaagctggaagaacacggattattggaatccactcaa
atgcatgttttgcaagaagaagatattgttaattttgagcatttaggtgtggaatttttc
cgcacaacacattctatccccgacactttaggtattgctgtccatacgccacaaggcatt
attattcagactggtgattacaagtttgatttaacacctgttggtaaccagccagcgcct
aacctgcaaaaaatggctaagctaggttctgaaggagttttgctattactgtcagacagt
actaatgcagaaattccaactttttctaagtcggagcgttttgtcggaaatacgattcac
caaattgtagagcggattgaaggacggattatttttgccactttcgcatctaacctttat
cgcgtttcccaagctgttgacgccgccatgcaaaatggacgtaaagtagctgtttttggt
cgtagtatggagcaagccattgttaatgggcgagaattagggtatttagatattcctgat
agtgagattctagatgctgccgacattaacaaactacctgctaataaagtaatgttactt
tgtactggatctcaaggagagccaatggctgccttgagtcgcattgcgaatggtacacat
cgccagatcacagttcaaccgggtgatactgtaatcttttcttctaatccaattcccggt
aataccactagtgtcaatcacctgattaatgaattagaagaagctggcgctgatgttatt
catggtaaagttaataatatccacgcttcaggtcatggtggtcaagaagaacaaaaacta
atgttgcgcttaattgagcctaaatttttcatgccaattcacggtgaatatcgtatgttg
aaaattcacactgaactagcacaattatgtggtgtcccagaagatcatacttttattttt
gaaaatggcgatgttttggcacttactaagaattcagctcgtaaagctgatcacgtgcca
gctggcgatgtttacgttgacggcaatggaattggtgatattagcaatgttgtgattcat
gaccgacaaatattgtctgaagaaggattggtaattgtcgttgctacaattgattatcac
aagggattagtattatctggaccagatattttatcacgtggctttgtttacatgcgcgaa
tctggtgatttaatcaatcaagctcaaaagagggttttccatacaattaaaactcatcta
gatgcatcagataaagttaatgaagctgtcttaaagcgtgatattattgataatttacaa
gagtttctctttcgaagaacagaaagacacccagtcattttaccaatgatcatttctaca
caagtataa
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