KEGG   Bombilactobacillus thymidiniphilus: MOO47_01955
Entry
MOO47_01955       CDS       T08331                                 
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
bog  Bombilactobacillus thymidiniphilus
Pathway
bog03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bog00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    MOO47_01955
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bog03021]
    MOO47_01955
   03400 DNA repair and recombination proteins [BR:bog03400]
    MOO47_01955
Enzymes [BR:bog01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     MOO47_01955
Transcription machinery [BR:bog03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     MOO47_01955
DNA repair and recombination proteins [BR:bog03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      MOO47_01955
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L RNA_pol_L_2 HHH_5 SAM_EPH
Other DBs
NCBI-ProteinID: UQS83975
LinkDB
Position
complement(363089..364024)
AA seq 311 aa
MIEFEKPVITKIDETDNYGKYVIEPLERGYGTTLGNSLRRVLLASLPGTAVSDIQIDGVL
HEFTTIDGVLEDVTEIVLNVKKLSLKLHSDEKKVEINVDGPKKVTAADIITDDDLEILDP
DQYICTVAEGGQLHMQLTVKVGRGYVSADQNKNDETPISVLPVDSIFTPVSRVNYQVEHT
RVGKRSDFDKLTLDVWTNGSIEPKDAISLAAKVLTEHLEIFVDLTDTAKNAEMMVEKEET
RKEKKLEMTIEELDLSVRSYNCLKRAGINTVQELTDKSEADMMKVRNLGRKSLEEVKVKL
INLGLSLRQDD
NT seq 936 nt   +upstreamnt  +downstreamnt
atgattgaatttgaaaaacctgttattacaaaaattgatgaaacagataattatggcaaa
tacgtcattgaaccattagaacgcggttatggaactactttaggtaattctttgcgtcga
gttttgttagcatcgctgcctggaactgcagtttctgacattcaaattgacggggttttg
catgaatttacaactattgatggtgtcttagaagatgttactgagattgtcttaaatgtt
aagaaattatctttgaagttacattctgacgagaaaaaagttgaaattaatgttgatgga
ccgaaaaaagttactgccgctgatattattactgatgatgacttagaaattttggatcct
gatcagtatatttgtacggttgctgaaggcggtcaattgcatatgcaattaactgttaag
gttggtcgaggttatgtttcagctgaccaaaataaaaatgatgaaactccaattagtgtt
ctacctgttgactcaatttttacccctgtttctcgtgtcaattatcaggttgaacacact
cgagtaggtaagcgtagcgattttgataaattgacgttagatgtttggacaaatggttcc
attgaacctaaagatgctattagtttagctgctaaagtgttgactgagcatctagaaatt
tttgtggatctgacggatacggctaagaacgcagaaatgatggttgaaaaagaagaaact
cgtaaagagaagaaactggaaatgaccattgaagaacttgatttatcagttcgttcctat
aattgcttgaaacgtgcgggaattaatactgttcaagaattaaccgataaatctgaagct
gacatgatgaaagtacgtaatttagggcgtaagtctttagaagaagtaaaagttaagtta
attaacttaggactttcattgcgtcaagatgattaa

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