Bombilactobacillus thymidiniphilus: MOO47_02300
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Entry
MOO47_02300 CDS
T08331
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bog
Bombilactobacillus thymidiniphilus
Pathway
bog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MOO47_02300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bog03019
]
MOO47_02300
03009 Ribosome biogenesis [BR:
bog03009
]
MOO47_02300
Enzymes [BR:
bog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MOO47_02300
Messenger RNA biogenesis [BR:
bog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MOO47_02300
Ribosome biogenesis [BR:
bog03009
]
Prokaryotic type
rRNA helicases
MOO47_02300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UQS84035
LinkDB
All DBs
Position
complement(421324..422793)
Genome browser
AA seq
489 aa
AA seq
DB search
MKFSELNLDQDILTAITNAGFTEATPIQAQTIPLVLSGVDVIGQAQTGTGKTASFGLPLL
QEVDVHAPFVQALVISPTRELAVQTQEELHRLGKNKHVSVQAVYGGSDIRRQIKALQNHP
QIVVGTPGRLLDHIKRHTLKLENVRTVVLDEADEMLDMGFVDDIENILKNVQTKHQTLLY
SATMPKPIMNIAERFMQDPKIVQIKSKELTADKIEQYMIRSKDFEKFNIMTRLFDVQKPE
LALIFGRTKRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLRQFKAGKLDYLVATDVAA
RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGRSGVSVTFVSPNEMSYLRSIEQLTKV
RMLPLKPPTDEQALAGQLETAKEQIALQVKNDRLAKLNDAAQDLLEQYDATTLVAVLLKN
LTKDSEDIPVKITPERPLAARRYNGGNRRRDNNRRGGRSRSNGNYRGNSNNNHGHRNKRD
RNYTIRNNK
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttagtgaacttaatttagatcaagatatattgacagctattacgaatgctggc
tttactgaggcaacgccgattcaggcacaaacaattccgttagttttatcaggtgttgat
gttattggtcaagctcaaactggaactggtaaaactgcttcttttggtttacctttattg
caagaagttgacgtacatgcacctttcgtgcaagctttggtcatttccccaacgcgtgaa
ttggctgtgcaaacacaagaagaattacaccgtttaggcaagaataaacatgtttctgtc
caagctgtttacggtggctctgatattcgccgacagatcaaagctttacaaaatcatcca
caaattgttgtgggaactccgggacgtttattggaccatatcaagcgccacactttgaag
ttagaaaatgtgcgtacagttgttttggatgaagctgatgaaatgttagatatgggcttt
gtagatgacattgaaaacattttgaaaaatgtccaaactaaacatcaaaccttgttgtat
tcggcaacaatgcctaaaccgattatgaatattgctgagcggttcatgcaagatcccaaa
attgttcaaattaagtctaaagaactgacagctgataaaattgaacaatatatgattcgc
tccaaagattttgagaaatttaatattatgacgcggttgtttgacgtccaaaaaccagaa
ttagctttgatttttggccgtactaaacggcgagttgatgaattaacacgaggcttgaaa
gcacgtggttataatgctgaaggtattcacggtgatttatcccaacaaaagcggatgagt
gtgttacgccaatttaaagcaggtaaattagactatttagtagcaactgatgtagcagcc
cggggcttagatatttccggtgtgagtcatgtttataactatgatattcctcaagatcct
gatagttatgtgcatcgaattggtagaacgggtcgtgcaggtcgttctggtgtgtcagta
acttttgtttcgcccaatgaaatgagttatttacgcagtattgaacaattaaccaaagtg
cgcatgttgccactcaaaccaccgactgatgagcaagctttggctggacaattagaaact
gctaaagagcaaattgctttacaggttaagaatgatagattagctaagctgaatgatgct
gcgcaagatttattggaacaatatgatgcaacgactttagtagctgttctattgaagaat
ttgacgaaggattccgaagatattccagttaaaataacgccggaacgtccattggctgca
cgccgttataatggtggtaatcgtcgtcgggacaataaccgtcgcggtggtcgttcacga
tctaacggtaattatcgtggcaacagcaataataatcatggtcatcgtaataaacgtgat
cgtaattatacaatccgtaataataaataa
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