Bordetella sp. H567: AKI39_15815
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Entry
AKI39_15815 CDS
T04979
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
boh
Bordetella sp. H567
Pathway
boh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKI39_15815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boh03019
]
AKI39_15815
03016 Transfer RNA biogenesis [BR:
boh03016
]
AKI39_15815
Enzymes [BR:
boh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AKI39_15815
Messenger RNA biogenesis [BR:
boh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AKI39_15815
Transfer RNA biogenesis [BR:
boh03016
]
Prokaryotic type
tRNA degradation factors
AKI39_15815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
HTH_20
HTH_IclR
HVO_A0261_N
MarR_2
OB_Dis3
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
AOB31857
LinkDB
All DBs
Position
complement(3530529..3532994)
Genome browser
AA seq
821 aa
AA seq
DB search
MAKRSSDDAANKNRPTVVPEAPPDFDPDVPSREAILRALRSAGAPLSPAELADRMGVARP
DTSIGFERRLAAMERDGQLLPNRKGVLLLATKLDFVAGRVQGHRDGFGFLVRDDGGPDIF
LSPREMLKVLHGDRVLVKPGGEYRGKPEGNIVEVIERRTNKLVGRFLHEHGLSIVVPEDQ
RIKHDILIPPGDTNGAQHGQVVSVEIIEQPTRHTQPLGRVAEVLGEIDDPGMEIEIAVRK
FDVPVEFSEAARKQAARLPDTVRKTDLKDRIDLRDVPLITIDGEDARDFDDAVYCEAVEL
GSGQRKRPAWRLLVAIADVSHYVQPNDALDDDAVERGTSVYFPRRVIPMLPETLSNGLCS
LNPHVDRLVLVCDMVIPASGAKAGTVTAYQFYNAVMHSHARTTYTNIWAALQQPGGPAAQ
AMAGVMPQVRDLYELYQLLSQARRKRGAIDFDTVETKIVCNELGRIEQIVGVVRNDAHKL
IEECMLAANTCAADFMARSKHPGLYRIHEGPTPDRLQSLREFLRTLGLTLGGGDAPTAKD
YGEFLDSVRARPDYPLLQTMCLRSMQQAMYSPENVGHFGLAYPAYTHFTSPIRRYPDLLT
HRVIKALLHGQRYVPSLEDEPVVIGRSHKEHEHAIWEKLGLLLSSSERRADDASRDVEAW
LKCWFVKERVGEDFSGTVTGVASFGIFVTLDTLHVEGLVHVSELGGEYFQFNDALHELRG
ERTGMRYRLTDKVQVQVARVDLEARRIEFRLVKGTSFESLRKAAQRGPEEPPRRIKKAAG
TKPKALKGQTAKVRRAEAKKADRVAVRQAQASTPSAARKRR
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaaacgatcgagcgacgacgccgcgaacaagaacagaccgacggtcgtgcctgag
gcgccccccgatttcgatcccgacgtacccagccgagaagccattcttcgtgcgttgcgg
tccgccggtgcccccttgtcgcccgccgagcttgccgaccgcatgggcgtggcgcgtccc
gatacctccataggctttgagcgccgcctggccgcgatggagcgcgacggccaactgctg
cccaaccgcaagggcgtgctgctcctggccaccaaactggacttcgtggcgggcagggtg
cagggccaccgcgatgggttcggcttcctggtgcgtgatgacggcgggccggacatcttc
ctctcgccgcgcgaaatgctgaaggtgctgcatggggaccgcgtgctggtcaagcccgga
ggcgaataccgcggcaagcccgaaggcaatattgtcgaagtcatcgaacgccgcaccaac
aagctggtggggcgcttcctgcatgagcacggcctgtccatcgttgtgccggaagaccag
cgcatcaagcacgatatcctgattccgcccggcgacaccaacggcgcccagcacggacag
gtcgtgtcggtggaaatcatcgaacaacccacccggcacacgcagcccctgggacgcgtc
gccgaagtgctgggcgaaatcgacgatcccggcatggaaatcgaaatcgccgtacgcaaa
ttcgacgtgccggtggagttctcggaagccgcgcgcaagcaggccgcccgcctgccggac
accgtgcgcaagacggatctgaaggaccgcatcgacctgcgcgacgtaccgttgatcacc
atcgacggcgaggacgcgcgcgacttcgacgatgcggtgtattgcgaggcggtggagctc
ggttccggccagcgcaagcggccggcgtggcgcctgctcgtcgcgatcgccgatgtgagc
cattacgtacagcccaacgacgcgctggatgacgatgcggtggagcgcggcacgagcgtg
tacttcccgcgccgggtcattcccatgctgccggaaacgttgtcgaacgggctgtgttcg
ctgaatccgcacgtcgacaggctggtgctggtttgcgacatggtgattccggccagcggg
gccaaggccggcacggtcaccgcgtatcagttctacaacgcggtcatgcattcgcatgcg
cgcaccacgtacacgaacatctgggcggcgctgcagcagcccggcgggccggccgcgcag
gccatggccggtgtgatgccgcaggtgcgcgacctgtacgagctgtaccagctgctgtcg
caggcgcgccgcaagcgcggcgcgatcgacttcgatacggtcgagaccaagatcgtctgc
aacgagctggggcgcatcgaacagattgtcggcgtggtgcgcaatgatgcgcacaagctc
atcgaggaatgcatgctcgcggccaacacctgcgcggccgacttcatggcgcgcagcaag
catcccggcctgtaccgtatccatgaaggacccacgccggatcgtctgcagtcgttgcgc
gaattcttgcgcacgctgggactgacgctgggcggcggtgatgcaccgacggccaaggac
tacggcgagtttctcgacagcgtgcgcgcgcgccccgactatcccctgctgcagaccatg
tgtctgcgttcgatgcagcaggccatgtacagccctgaaaatgtcggccatttcgggctg
gcctatccggcgtatacgcatttcacctcgcccatccggcgttatcccgacctgctgacg
caccgggtgatcaaggccttgttgcacggccagcgatatgtcccctcgctggaggacgag
cccgtggtgataggccgctcccacaaggagcacgagcacgccatctgggaaaagctgggc
ctgctgctttcatccagcgaacgccgcgccgacgatgcgtcgcgcgacgtggaggcctgg
ttgaagtgctggttcgtcaaggaacgcgtcggcgaggacttcagcggcaccgtgaccggg
gtggccagcttcggcatcttcgtcacgctggataccttgcacgtggaaggactcgtacac
gtctcggaactgggtggcgagtacttccagttcaacgacgcgctgcatgaattgcgcggc
gaacgtaccggcatgcgctaccgcctgacggacaaggtccaggtacaggtggcgcgcgtg
gatctggaagcgcggcgcatcgagttccgcctggtcaagggcaccagttttgaatcgctg
cgcaaggccgcccagcgtgggccggaagaaccgccccggcgcatcaagaaggcggccggc
accaagcccaaggccctgaagggccagacggccaaggtgcggcgcgccgaagcaaagaag
gcggatcgcgtggccgtgcgccaggcgcaggcttccaccccgtccgccgcgcgcaagcgc
cgttga
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