Bordetella sp. H567: AKI39_21350
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Entry
AKI39_21350 CDS
T04979
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
boh
Bordetella sp. H567
Pathway
boh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKI39_21350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boh03019
]
AKI39_21350
03400 DNA repair and recombination proteins [BR:
boh03400
]
AKI39_21350
Enzymes [BR:
boh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AKI39_21350
Messenger RNA biogenesis [BR:
boh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AKI39_21350
DNA repair and recombination proteins [BR:
boh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AKI39_21350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
P-loop_SecA
DUF4096
Motif
Other DBs
NCBI-ProteinID:
AOB32741
UniProt:
A0A1B2R6Y3
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All DBs
Position
complement(4771471..4773168)
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AA seq
565 aa
AA seq
DB search
MPDSPIPIALPAQARRVLRERFGVASLRPGQAEVLASVLRGNPTIAVMPTGSGKSLCYQV
PALCNGGLTVVVSPLIALMKDQDEKLREYGVDAGVFNSATPDEDQQRYLRKGGGKHQPIV
LATPERLGDAGFMQWLRRQTVRLFVVDEAHCISQWGHDFRPAFLEIPAAVRAVGSPPVLA
MTATATDEVIHDIAATLDLPAACVIKVGVYRPNLDYAVRQVSDEERKQDAVLELVREAQG
PAIVYSATVKEAEILHQVLRDAGMDAALYHGRLNATARRQAQDAFMSGTTRVMVATDAFG
MGIDKPDVRLVVHAQLPGSLDAYYQESGRAGRDGEPARCILIHEEKDKRIQQFFLANRYP
SRELLLRVLGVLEDAPAPLAEDELLRALGKVGARKLRVGLKLLADAGLIEKDSHGKLRTR
GDADARARASAAAEQYERRAEHDRETLAAMVGYARSGRCRWRMLLAHFGDVPQWERCGHC
DSCDLARQAEAVEKAGDAPPDRQGRPAPLRVGDGVRVRRYGAGVVEAVTRERVDIRFPNG
DLRRFLPGYVTRLKGVPPVPPVPAS
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgcccgactcgcccattcccattgccttgcctgcccaagcccggcgcgtgctgcgcgaa
cgcttcggcgtggccagcctgcgccccggccaggccgaagtcctggccagcgtgttgcgg
ggcaacccgacgatagccgtgatgcccacgggcagcggcaagtcgctttgctaccaggtg
cccgcgctgtgcaatggcggcctgacggtggtggtgtcccccctcatcgcgctgatgaag
gaccaggacgagaagctgcgcgagtacggcgtggatgccggcgtcttcaatagcgccacc
cccgatgaggaccagcagcgctacctgcgcaagggcggcggcaagcatcagcccatcgtc
cttgccacgccggagcggctgggcgatgccggcttcatgcaatggctcaggcgccagacc
gtccgcctgttcgtcgtggacgaagcgcattgcatttcgcaatggggccatgacttccgg
ccggccttcctggagatccccgccgccgtgcgtgccgtgggctcgccgccggtactggcg
atgacggcgacggcaaccgacgaggtcatccacgacatcgcggccacgctggacctgccc
gcggcctgcgtcatcaaggtgggtgtgtatcgcccgaacctcgattacgcggtgcgccag
gtcagcgacgaggagcgcaagcaggatgcggtactggaactcgtgcgggaagcgcagggg
cccgccattgtgtatagcgccacggtcaaggaggcggagatcctgcatcaggtattgcgc
gacgccggcatggacgcggcgctgtatcacggccgcttgaatgccacggcgcggcgacag
gcgcaggacgccttcatgtccggcaccacgcgcgtcatggtggctaccgacgcctttggc
atgggcatcgacaagccggatgtgcggctggtcgtgcatgcccagctgcccggcagcctg
gatgcctactaccaggagtcgggccgcgcgggacgcgacggcgagcccgcgcgctgcata
ctgattcacgaggaaaaagacaagcgcatccagcaattctttctggccaaccgctatccg
tccagggaattgctgctgcgcgtgctgggcgtcctggaagacgcgcccgcaccgctggcg
gaggacgaactattgcgggccttgggcaaggtgggcgcgcgcaagctgcgcgtcggattg
aagctgcttgccgacgccggcctgatcgagaaggacagccacggcaaactgcgcacgcgg
ggcgatgccgatgcccgtgcgcgcgcatcggccgccgccgaacaatacgaaaggcgcgcc
gagcacgaccgtgaaaccttggccgccatggtgggatatgcgcgcagcggacgctgccgc
tggcgcatgctgctggcccattttggcgacgtgccgcagtgggaacgctgcgggcattgc
gacagctgcgacctggcgcggcaggccgaagccgtcgaaaaggcgggcgacgcaccgccg
gatcgccaaggcaggcccgcgcccctgcgggtcggcgatggcgtgcgggtgcgccgctat
ggcgcgggcgtggtcgaggcggtgacgcgcgaacgcgtcgatatccgctttcccaatggc
gacttgcggcgtttcctgcccggatacgtcacgcgattgaaaggcgtgccgcccgtgccg
cccgtgccggcgtcttga
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