Bordetella sp. H567: AKI39_22140
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Entry
AKI39_22140 CDS
T04979
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
boh
Bordetella sp. H567
Pathway
boh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
boh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AKI39_22140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
boh03400
]
AKI39_22140
Enzymes [BR:
boh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
AKI39_22140
DNA repair and recombination proteins [BR:
boh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
AKI39_22140
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
DUF5648
Motif
Other DBs
NCBI-ProteinID:
AOB32864
LinkDB
All DBs
Position
4953037..4953819
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AA seq
260 aa
AA seq
DB search
MLRIISANLNGIRSAANKGFFPWVAKQNADFICLQELKAQAADMTLEMLNPPGLYGYFHY
AEKKGYSGVGVYARTQPLQVIEGLGVPEIDSEGRYLELVYDQHSIISVYLPSGSSGEHRQ
TAKFAFMEHFYTHLATLVKCGRQVVLCGDWNIAHNEIDLKNWKGNMKNSGFLPEERAWLT
KVFADLGWTDVYRRLHPEATGEAYTWWSNRGQAWAKNVGWRIDYQIATPEIAATAKAAAI
YKDERFSDHAPLIIDYDTVL
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcatcatctccgcaaacctgaacggcatccgctccgccgcgaacaaaggcttc
tttccctgggtggccaagcagaacgccgacttcatctgcctgcaggaactgaaggcccag
gcggccgacatgacgctggaaatgctcaacccgccggggctgtacggctatttccactac
gccgaaaagaagggctacagcggggtcggggtctacgcccgcacccagccgctgcaggtc
atcgaaggcctgggcgtgccggaaatcgacagcgaaggccgctacctggaactggtctac
gaccagcattcgatcatttcggtctacctgccgtcgggatccagcggcgaacaccggcag
accgccaaattcgccttcatggagcacttctacacccacctggccacgttggtgaaatgc
gggcggcaggtcgtgctgtgcggcgactggaacatcgcgcacaacgagatcgacctgaag
aactggaagggcaacatgaagaacagcggcttcctgccggaggaacgcgcctggttgacc
aaggttttcgccgacctgggctggaccgacgtctatcgacgcctgcatccggaggccacc
ggcgaagcctatacgtggtggagcaaccgcgggcaggcctgggccaagaacgtcggctgg
cggatcgactaccagatcgccaccccggaaatcgccgccacggccaaggccgccgccatc
tacaaggacgagcgcttcagcgatcatgcgccgctgataatcgattacgacacggtgttg
tag
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