Bordetella sp. H567: AKI39_24515
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Entry
AKI39_24515 CDS
T04979
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
boh
Bordetella sp. H567
Pathway
boh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
boh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AKI39_24515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boh03021
]
AKI39_24515
03400 DNA repair and recombination proteins [BR:
boh03400
]
AKI39_24515
Enzymes [BR:
boh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AKI39_24515
Transcription machinery [BR:
boh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AKI39_24515
DNA repair and recombination proteins [BR:
boh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AKI39_24515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AOB33242
UniProt:
A0A1B2R8D3
LinkDB
All DBs
Position
complement(5474768..5479015)
Genome browser
AA seq
1415 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCSK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFRALM
GAEAVRELLRTIDIDREVETLRGELKATGSEAKIKKISKRLKVLEGFQKSGIKPEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIILRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRERINGKGEGIFFTDVAEVQRAYDNG
EVELQSRITVRLKEYDKDEQGEWQPVVRRYETTVGRALLSEILPRGLPFTVLNKALKKKE
ISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRGGISIAMNDMLIPSAKEIILAEASKE
VKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVGKAMMEQLATEPVTNRHGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVIIENDCGTSQGYSMKALVEGGEVIEPLRDRIL
GRVAAVDIVNPDTQETAIEAGTLLDEDLVDLIDRIGVDEVKVRTPLTCETRHGLCAHCYG
RDLGRGYMVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSALASAVETKSSGTVGF
ASTMRYVTNAKGERVAISRSGEIVIHDDNGRERERHKIPYGATVLVGDGEGVKAGARLAS
WDPLTRPIVSEYAGQVRFENIEEGVTVAKQVDEVTGLSTLVVITPKTRGGKIVMRPQIKL
VNESGEEVKIAGTDHSVSISFPVGALITVRDGQQVTVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLADVTGTVSFGKDTKGKQRLVITDLEGVSHEFLIPKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTEFIPGEQVERSELLNENDRVVAEDKRPASYDNVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHIARKDKEALEAAERE
AARQLANPFEESPVTIGSDIDSDAAPEAGNEPTIE
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgaccttttcaagcaagtctctcaagacgagcagttcgatgccatc
aagatcggcatcgcctcgcccgagaaaattcgttcgtggtcttatggcgaagtccgcaag
cccgaaaccatcaactaccgcacgttcaagccggaacgcgacggcctgttctgctcgaag
atcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgaaaagtgcggcgtggaagtcacggtcgccaaggtgcgccgcgag
cgcatgggccatatcgaactggccagccccgtcgcgcacatctggttcctgaagagcctg
ccgtcgcgcctgggcatggtgctggacatgacgctgcgcgatatcgagcgcgtcctgtac
ttcgaagcctggtgcgtgatcgaacccggcatgacgccgctcaagcgcggccagatcatg
tcggacgacgatttcctcgcgaagaccgaggaatacggcgatgacttccgcgcgctcatg
ggcgcggaagccgtgcgtgaactgctgcgcacgatcgatatcgaccgcgaagtggaaacg
ctgcgcggcgagctcaaggccactggttcggaagccaagatcaagaagatctccaagcgc
ctgaaggtgctggaaggcttccagaagtcgggtatcaagcccgagtggatggtcatggaa
gtgctgcccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccggaacaaccgcctgaag
cgcctgctggaactgaaggcaccggaaatcatcttgcgcaatgaaaagcgcatgctgcag
gaagccgtcgactcgctgctggacaacggccgccgtggcaaggccatgaccggcgccaac
aagcgtcagttgaagtccctggccgacatgatcaagggcaagagcggccgcttccgccag
aacctgctgggcaagcgggtggactactccggccgttcggtcatcgtggtgggcccgcag
ctcaagctgcaccagtgcggcctgcccaagctgatggcgctggagctgttcaagccgttc
atcttcaatcgcctggaaatgatgggtctggccacgaccatcaaggcggcgaagaagctc
gtcgaaagccaggaaccggtggtgtgggacatcctcgaagaggtgatccgcgaacacccg
gtcatgctgaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgaaccggtg
ctgatcgaaggcaaggcgatccagctgcatccgctggtctgcgcggccttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtcccgctgtcgctggaagcgcagctggaagcg
cgcaccctgatgctggcctcgaacaacgtgctgttcccggccaacggcgaaccgtccatc
gtgccgtcccaggatatcgtgctgggtctgtactacacgacgcgcgagcgcatcaacggc
aagggcgaaggcattttcttcaccgacgtggccgaagtccagcgtgcctatgacaacggc
gaagtcgagctgcaaagccgcatcaccgtgcgcctgaaggaatacgacaaggacgagcag
ggcgaatggcagcccgtcgtgcgccgctacgagaccaccgtgggccgtgcgctgctgtcg
gaaatcctgccgcgcggcctgcccttcacggtcctgaacaaggccctgaagaagaaggaa
atctcgcgcctgatcaaccagtccttccgtcgctgcggtctgcgcgacacggtgatcttc
gccgacaagctgatgcagtcgggcttccgcctggccacgcgcggcggcatttcgatcgcc
atgaacgacatgctgatcccgtcggccaaggagatcatcctggccgaagccagcaaggaa
gtgaaggaaatcgacaagcagtactcgtcgggtctggtcacgtcccaggaacgctacaac
aacgtggtggacatctggggcaaggccggcgacaaggtcggcaaggcgatgatggaacaa
ctggcgaccgaacccgtgaccaaccgtcacggcgaggaagtgcgccaggaatccttcaat
tccatctacatgatggctgactccggcgcccgcggttcggccgcccagatccgccagctg
gcgggcatgcgcggcctgatggccaagccggacggctcgatcatcgaaacgccgatcacc
gcgaacttccgcgaagggctgaacgtactgcagtacttcatctcgacgcacggcgcgcgc
aagggcttggccgataccgcgctgaagaccgcgaactcgggctacctgacgcgccgcctg
gtcgacgtgacgcaggatctggtcatcatcgaaaacgactgcggcacctcgcagggctat
tcgatgaaggcgctggtcgaaggcggtgaagtcatcgaaccgctgcgcgaccgcatcctg
ggccgcgtggccgcggtggacatcgtcaatccggatacgcaggaaaccgcgatcgaagcc
ggcacgctgctggacgaagacctggtcgacctgatcgaccgcatcggcgtggacgaagtc
aaggtccgcacgccgctgacctgcgaaacccgccatggcctgtgcgcgcactgctatggt
cgcgacctgggccgcggctacatggtcaacgtcggcgaggccgtcggtgtcatcgcggcg
cagtccatcggcgaaccgggcacgcagctcacgatgcgtaccttccacatcggtggtgcg
gcttcgcgttcggccctggccagcgcggtggaaaccaagtccagcggtacggtgggcttc
gccagcacgatgcgctacgtcaccaacgccaagggcgagcgggtggcaatctcgcgttcg
ggcgaaatcgtcatccatgacgacaacggccgcgaacgcgagcgccacaagatcccgtac
ggcgcgaccgtgctggtcggcgacggcgaaggcgtcaaggccggcgcccgtctggcaagc
tgggatccgctgactcggcccatcgtgtccgagtacgcgggccaggtccgcttcgagaac
atcgaggaaggcgtgaccgtcgccaagcaggtggacgaagtcaccggcctgtcgacgctc
gtcgtcatcacgcccaagacgcgcggcggcaagatcgtcatgcgtccgcagatcaagctg
gtcaacgagtccggcgaggaagtcaagatcgccggcaccgatcactcggtgagcatctcg
ttccccgttggcgcgctgatcacggtgcgtgacggccagcaggtgacggtcggcgaggtc
ctggcgcgtattccgcaggaatcgcaaaagacccgcgacattaccggcggtctgccccgc
gtggccgagctgttcgaagcccgttcgcccaaggatgccggcatgctcgccgacgtcacg
ggtacggtctcgttcggcaaggacaccaagggcaagcagcgcctggtcatcaccgacctg
gaaggcgtcagccacgagttcctgattccgaaggaaaagcaggttctggtgcacgacggc
caggtggtgaacaagggcgaaatgatcgtcgacggtccggcggacccgcacgatatcctg
cgcctgcagggtatcgagaagctggccacctacatcgtggacgaagtgcaggacgtgtac
cgtctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctg
cgtcgcgtgaacatcgtcgatgcgggtgatacggagttcatccctggcgaacaggtcgag
cgttccgagctgttgaacgagaacgatcgcgtggttgccgaggacaagcgtccggcttcg
tacgacaacgtcctgctgggtatcacgaaggcctcgctgtcgacggattccttcatctcg
gccgcttccttccaggagaccacgcgtgtcctgaccgaagccgccatcatgggcaagcgc
gacgaactgcgtggcctgaaggaaaacgtcatcgtgggtcgtctgatccccgccggtacc
ggtctggcgtatcacattgcccgcaaggacaaggaagcgttggaagcggcggaacgcgaa
gccgcgcgccagctggcgaatcctttcgaggaatcgccggtcaccatcggttcggacatc
gacagcgatgccgcgccggaagccggcaacgagccgacgatcgaataa
DBGET
integrated database retrieval system
