Bosea sp. Tri-49: BLM15_00795
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Entry
BLM15_00795 CDS
T05753
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
boi
Bosea sp. Tri-49
Pathway
boi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
boi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BLM15_00795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boi03021
]
BLM15_00795
Transcription machinery [BR:
boi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BLM15_00795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Phage_DsbA
Spermine_synth
Motif
Other DBs
NCBI-ProteinID:
AZO76291
LinkDB
All DBs
Position
155799..157814
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AA seq
671 aa
AA seq
DB search
MATKVSERDKSEAGSPEAPPSTDSPLLDLTDQAVKRMIKLAKKRGYVTYDELNEVLPSEE
FSSEQIEDVLGQLSEQGINVVDNEDPEAAGEERAARGKEGEEDEPEGGDMVEAQRSALPV
ETKRNLEPTERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQ
AIIIWRDELMEGKVLLRDIIDLEATYAGPDGKNPDQMPGEGEEGAEAAEEATPEGETPPE
GMDDDDMENNVSLSAMEAELKPRVLETFDSIASNYTKLRRLQDQDIANRLENTKLSPSQD
RKYKKLKDDIITAVKSLSLNNNRIEALVEQLYDINKRLISHETRLLRLAESYGVGREDFL
KQHIGAELDPKWLLRVSKLGSRGWREFVAQEKERIRELREDVHTLASETGLEIQEFRKIV
LMVQKGEREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEE
LAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRE
TTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPS
RSRKLRSFLDN
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaagtgagcgagcgggacaagtccgaagcgggttcccccgaagcgcccccg
agcacggacagccccctgctggatctcaccgatcaggccgtcaagcggatgatcaagctc
gccaagaagcgcggctatgtcacctatgacgaattgaacgaggttctgccctcggaggag
ttctcctccgagcagatcgaggacgtgcttggccagctcagcgagcagggcatcaacgtc
gtcgacaacgaggacccggaagctgccggcgaggagcgggcggcgcgcggcaaggaaggc
gaagaggacgagcccgaaggcggcgacatggtcgaggcgcagcgctcggcgctgccggtc
gagaccaagcgcaacctcgagccgaccgagcgcaccgacgatccggttcggatgtatctg
cgcgagatgggctcggtcgagctgctctcgcgcgagggcgaaatcgcgatcgccaagcgc
atcgaggccggccgcgaggcgatgatcgcgggcctctgcgagagcccgctgaccttccag
gcgatcatcatctggcgcgacgaattgatggagggcaaggtcctcctgcgcgacatcatc
gaccttgaagcgacctatgccggccccgacggcaagaatccggaccagatgccgggtgag
ggcgaagagggcgcggaagcggccgaggaagctacacctgagggcgagactccgcccgag
gggatggacgacgacgacatggagaacaacgtgtcgctctcggccatggaagccgagctg
aagccgcgcgtgctcgagaccttcgactcgatcgccagcaactacaccaagctgcgccgc
ctgcaggaccaggacattgccaaccggctggagaacaccaagctctcgccgtcgcaggac
cgcaagtacaagaagctgaaggacgacatcatcaccgcggtgaagtcgctctcgctcaac
aacaaccgcatcgaggcgctggtcgagcagctctacgacatcaacaagcgcctgatctcg
cacgagacccgcctgctgcgcctggccgagagctatggcgtcggccgcgaggacttcctg
aagcagcatatcggcgccgagctcgacccgaaatggctgctacgcgtctccaagctcggc
tcgcgcggctggagggagttcgtcgcgcaggagaaggagcgcatccgcgaactgcgcgag
gacgtccataccctggcgtcggagaccggcctggagatccaggagttccgcaagatcgtg
ctgatggtccagaagggcgagcgtgaggcgcggcaggcgaagaaggagatgatcgaggcg
aatctgcgtctcgtgatctcgatcgccaagaagtacaccaatcgcggcctgcagttcctc
gacctgatccaggaagggaacatcggcctgatgaaggcggtcgacaagttcgagtaccgc
cggggttataagttctccacttacgcgacctggtggatccggcaggcgatcacccgctcg
atcgccgaccaggcccgcaccatccgcatcccggtgcacatgatcgagacgatcaacaag
atcgtccggacctcgcgccagatgctgcacgagatcggccgcgagccgaccccggaggag
ctggccgagaagcttgccatgccgctggagaaggtccgcaaggtcctcaagatcgccaag
gagccgatctcgctcgagaccccgatcggcgacgaggaggattcgcatctcggcgacttc
atcgaggacaagaacgcgatcctgccgatcgacgcggcgatccagagcaatctgcgcgag
acgacgacccgcgtgctggcctcgctcacgccgcgcgaggagcgcgtgctgcgcatgcgc
ttcggcatcggcatgaacaccgaccacaccctcgaagaggtcggccagcagttcagcgtc
acccgcgagcgcatccgccagatcgaggcgaaggcgctgcgcaagctcaagcacccgagc
cgctcgcggaagctcaggagcttcctggacaactag
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