Bosea sp. Tri-49: BLM15_05940
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Entry
BLM15_05940 CDS
T05753
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
boi
Bosea sp. Tri-49
Pathway
boi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
boi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BLM15_05940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
boi03400
]
BLM15_05940
Enzymes [BR:
boi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLM15_05940
DNA repair and recombination proteins [BR:
boi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BLM15_05940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
Cas3-like_C_2
UB2H
SecA_DEAD
RecG_dom3_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AZO77199
UniProt:
A0AAD1A2E9
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All DBs
Position
1226792..1230340
Genome browser
AA seq
1182 aa
AA seq
DB search
MSIPPPTQIAKPQLERILDALNRGDKPVLAGVPDGFDAVILADLTRARAKKSEGPALIVF
IARDGQRLQVLENALQFVAPDLEVMSFPAWDCQPYDRVSPAPSIVAHRMTTLSRLARTKS
GDKPRLLLTTVNAALQRVPAFGKVASESFSAAPGNMVDTEELARWLDVNGYLRTSTVRET
GEFAVRGGIVDLYPPGMPAPIRLDFFGDTLESIRTFDPETQRTTGQLRGLDLVPMSEAQM
TSDSIRRFRQSYIATFGTPGRDDTLYEAVSEGRRPAGLEHWLPLLAEKLDTLFTYLPDVP
IVLDHQAEDAVGERISLIKDYYDARKSALDQPSPGSMPYKPLLPEALYLSPADWRGIVGE
AGVASLTPFQLPESEGKLVVDLTGKQGRSFAAERADNAGSVFDAAVAHVKALEADGRRVI
LAAWSEGSRERLAHVLADHGLKTVQMTGSLRAAFDLKPGTTALAVWGFETGFEAGKLAVI
GEQDILGDRLVRPRRKTRRPQDFINELSSLTPGDIVVHVDHGIGRFVGLQTITAAGAPHD
CLEIHYAGDAKLFLPAENIELLSRYGSEDTEVVLDRLGGGGWQARKAKLKQRIREMAGKL
IQIAAARALKEAPRLVPQDGLYDEFCARFPYEETEDQQNTIDAVLDDLAAGRPMDRLVCG
DVGFGKTEVALRAAFTTALAGKQVAVVVPTTLLARQHYRNFAERFAGLPVKVGQASRFVS
APDLKAVKQGISDGTMDITVGTHALLGKGIDFKDLGLVIVDEEQHFGVAHKERLKEMRAE
VHMLTLTATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFVTPFDPLIVREALLRERYR
GGRSFYVVPRIEDIAEVKDFLDKQVPEAKVGIAHGQMAAGTLEDVMTAFYEGQYDILLST
TIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAYALFTVPANRKLTDQADK
RLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQQMLEEAVAALKA
GVEIESDAQWSPTIQIGAPVMIPEHYIGDLTLRLTLYKRLSTMDDDGELQSFGAELVDRF
GPLPEEVKQLLEIVAIKALCKRANVEKVEAGPKGIIVAFRDNEFANPEGLVSYVAKIGTL
AKVRPDMRVVFIDDLESAEQRLTGTRRLLTDLARIAERKKAA
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgagcattccgcctcctacccagatcgccaagccgcagctcgagcgcatcctcgatgcg
ctgaatcgcggcgacaagccggtgctcgccggcgtgccggacggtttcgatgccgtcatc
ctcgccgatctgacgcgcgctcgcgccaagaagtcggaagggccggcgctgatcgtcttc
atcgcccgcgacggccagcgcctgcaggtgctggagaacgcgctgcagttcgtcgcgccc
gatctcgaggtgatgagcttcccggcctgggactgccagccctatgaccgcgtctcgccg
gcgccctcgatcgtcgcgcatcgcatgacgacgctgtcacggctcgcccggaccaaatcg
ggcgacaagccgcgtctgctgctgacgacggtcaatgccgcgctgcagcgcgtgccggct
ttcggtaaggttgcctccgagagcttctcggccgcaccgggcaacatggtcgacaccgag
gagctggcgcgctggctcgacgtcaacggctatctaaggacctcgacggtgcgcgagacc
ggcgagttcgccgtgcgcggcggtatcgtcgacctctacccgccgggcatgccggcgccg
atccggctcgacttcttcggcgatacgctggaatcgatccgcaccttcgatccggagacg
caacgcaccaccgggcaattgcgcgggctcgacctcgtgccgatgtccgaggcgcagatg
acgagcgacagcattcgccgcttccgccagtcctatatcgcaaccttcggcacgcccggc
cgcgacgacacgctctacgaggcagtgagcgagggtcggcgcccggcggggctggagcac
tggctgccgctgctggcggaaaagctcgacacgctcttcacctatctgcctgatgtcccg
atcgtgctcgaccaccaggccgaggatgcggtcggcgagcgcatcagcctgatcaaggac
tattacgacgcccgcaagagcgcgctcgaccagccttcgccaggctcgatgccgtataag
ccgctgctgccggaggcgctctatctctcgccggccgactggcgcggcatcgtcggtgag
gccggcgtcgcttcgctgacgccgttccagttgccggagagcgaaggcaagcttgtcgtc
gatctcacaggcaagcagggccgcagtttcgcggccgagcgtgccgacaatgccggtagc
gtcttcgatgctgctgtcgcccatgtgaaagcattggaggcggacggacgccgcgtcatc
ctcgccgcctggtcggaaggctcgcgcgagcgcctcgcccatgtgctggccgatcacggc
ctcaagaccgtgcagatgaccggctcattgcgggccgccttcgatctcaagcccggcacc
acagcgctcgccgtctggggcttcgagaccggctttgaggcggggaagctcgccgtcatc
ggcgaacaggacattttgggcgaccgcctggtgcgaccgcgtcgcaagacgcgccggcca
caggacttcatcaacgagctgtcctcgctgacgccgggcgatatcgtcgtccatgtcgac
cacggtatcggccgcttcgtcggcttgcagacgatcaccgcggccggggcgccgcatgac
tgtctcgaaatccattatgccggagacgccaagctgttcctgccggcggagaacatcgag
ctgctctcgcgctatggctcggaggacaccgaggtcgtgctcgatcggctcggcggcggt
ggctggcaagcgcgcaaggccaagctgaagcagcgcatccgcgagatggcgggcaagctg
atccagatcgccgctgcccgcgccctcaaggaagcgccgcgcctggtgccgcaggacggg
ctctacgacgagttctgcgcccgcttcccctatgaggagaccgaggaccagcagaacacc
atcgacgccgtgctcgacgatctcgcggctggccgcccgatggaccggctggtttgcggc
gatgtcggcttcggcaagacggaagtcgctctgcgtgccgccttcaccacggcgctcgcc
ggcaagcaggtcgcggtcgtggtgccgacgacgctcttggcgcgccagcactaccgcaat
tttgccgagcgcttcgccgggctccccgtgaaggtcggccaggcttcgcgcttcgtctcg
gcgcctgacctcaaggcggtgaagcagggcatttccgacggcaccatggacatcaccgtc
ggtacccacgccctgctcggcaagggcatcgacttcaaggatctcggcctcgtcatcgtc
gacgaggagcagcatttcggcgtcgcccacaaggagcggctgaaggagatgcgcgccgag
gtccacatgctgacgctcaccgcgacgccgatcccgcgcacgctccagctcgccatgact
ggggtgcgcgagctctcgatcatcgcaacgccgccggtcgaccgcctggcggtccgcacc
ttcgtcacgccgttcgatccactgatcgtgcgcgaggcgctgctgcgcgaacgctatcgg
ggagggcgctcgttctatgtcgtgccacgcatcgaggacatcgccgaggtcaaggatttc
ctcgacaagcaggtgccggaggccaaggtcggcatcgcccatggccagatggcggcaggc
acgctggaagacgtgatgaccgccttctacgagggccagtacgacatcctgctctcgacc
acgatcgtcgagtccgggctggacattccgaccgccaacacgctgatcgtgcatcgcgcc
gacatgttcggcctggcgcagctctaccagctgcgcggccgcgtcggtcgctcgaaggtg
cgcgcgtatgcgctcttcaccgtgccggccaaccgcaagctgaccgaccaggccgacaag
cgcctgaaggtgctgcaatcgctcgatacgctcggcgccggcttccagctcgccagccac
gacctcgacatcagaggcgccggcaacctcctcggcgacgagcagtccggccatatcaag
gaggtcggctacgagctctaccagcagatgctggaggaggcggtggcggcgctcaaggcc
ggcgtcgagatcgaaagcgacgcgcaatggtcgccgacgatccagatcggcgcgccggtg
atgatccccgagcactatatcggcgatctgacgctcaggctgacgctctacaagcgcctc
tcgaccatggacgacgatggcgagctgcaatccttcggtgccgaattggtcgaccgcttc
ggcccgctgccggaggaggtcaagcaactgctggagatcgtcgcgatcaaggcgctgtgc
aagcgcgccaatgtcgagaaggtcgaggccgggccgaagggtatcatcgtcgccttccgc
gacaacgaattcgccaacccggaaggtctcgtctcctatgtcgcgaagatcggcaccctg
gcaaaggtccgccccgatatgcgcgtcgtcttcatcgacgatctcgagagcgccgagcag
cgcctgacgggcacgcgccggctcctgaccgatcttgcgcgcatcgccgagcggaagaag
gctgcgtaa
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integrated database retrieval system
