Bordetella sp. J329: CBF45_04980
Help
Entry
CBF45_04980 CDS
T05850
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
boj
Bordetella sp. J329
Pathway
boj03030
DNA replication
boj03410
Base excision repair
boj03420
Nucleotide excision repair
boj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
boj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBF45_04980
03410 Base excision repair
CBF45_04980
03420 Nucleotide excision repair
CBF45_04980
03440 Homologous recombination
CBF45_04980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
boj03032
]
CBF45_04980
03400 DNA repair and recombination proteins [BR:
boj03400
]
CBF45_04980
Enzymes [BR:
boj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CBF45_04980
DNA replication proteins [BR:
boj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CBF45_04980
DNA repair and recombination proteins [BR:
boj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CBF45_04980
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBF45_04980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AZV93147
LinkDB
All DBs
Position
1149551..1152274
Genome browser
AA seq
907 aa
AA seq
DB search
MNKTLLLVDGSSYLYRAYHAMPDLRNAQGEPTGALYGVINMLRRLTQDYQADYAACIFDA
KGKTFRDDLYPEYKAQRPSMPEDLAAQIEAIHETVRALGWPVLSIGGVEADDVIGTLALQ
GEQAGMHVVVSTGDKDLAQLVTPKVTLVNTMSGEVLDPEGVKQKFGVDPDHIVDYLMLIG
DTVDNVPGVTKVGPKTAVKWLDAHGDIAGLVAAAATIKGVAGENLRQAIDQFGMTRELLT
VKTDCALDPAIASLDALKMRAPDTDKLISLYDRYGFRTWLRDLSGDQARIPEGDSRIAVE
SVAPTAVQAEYETVTTPEQLQAWVDRINQAELVALDTETTSLDAMQARLVGLSLAVRPGQ
ACYIPVAHRGPDQPEQLPLAQVLDALRPWLEDPSKAKLLHHAKYDTHVLANEGVRLLGVR
HDTMLQAYALESHRSVGMNELAQRWLGRSGVAYEDLCGKGAKQIGFDEVPLEQAAHYASE
DADFTYALHEALYPKVCEQKGLLAIYELEMLVFHVLWQVERNGVLIDAAELGRQSHEIGQ
QLVTLEQRAYEIAGQPFNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLTKLAQDY
PLPQVLLEYRGLAKLKSTYTDKLPRMINPATGRVHTNYAQAAVITGRLASSDPNLQNIPV
RTEAGRRVRRAFIAPAGRVILSADYSQIELRVMAHISGDKNLQQAFADGKDIHRATASEV
FGVPLEAVSAEQRRAAKAINFGLIYGMSAFGLAGNLGITRDAAQSYIDRYFHRYPGVARY
MDEIRQQAREQGYVETVFGRRLWLPEIRGGSGPRRQAAERAAINAPMQGTAADLIKKAMV
AVQDWLAQEKLDSLLIMQVHDELVLEVPNAELERVRQQLPGLMCDVATLAVPLVAEVGAG
QDWEHAH
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaccttgttgctggtcgatggatcgagctatctctaccgcgcctatcacgcc
atgccggatctgcgcaacgcccagggcgagcccacaggggcattgtatggggtgatcaat
atgctgcggcggctgactcaggattatcaggcggattatgcggcttgtatattcgatgcg
aaaggaaaaaccttccgcgacgacctttatcccgagtacaaggcgcagcgtccttccatg
ccggaggacctcgccgcccagatcgaggcaattcacgaaaccgtgcgggcgctgggctgg
ccggtgctcagcatagggggtgtcgaagccgatgacgtgatcggcacgctggccttgcag
ggtgagcaggccggcatgcatgtggtggtttcaactggtgacaaagacctggcgcagttg
gtgacgcccaaggtcacgctggtcaacaccatgagcggcgaagtgctggacccggaaggc
gtgaagcagaagttcggcgtcgatccagaccacatcgtcgattacctgatgctgatcggc
gataccgtcgacaacgtgccgggcgtgaccaaggtcgggcccaagacggccgtgaagtgg
ctggacgcgcatggcgacatcgccgggctggttgcagcggcggccacgatcaaaggcgtg
gccggcgagaacctgcggcaggccatcgaccagttcggcatgacccgagaactgctgacg
gtaaaaacggattgtgcgctggacccggccatcgccagcctggatgcgctgaaaatgcgt
gcgccggataccgacaagctgatctccctgtatgaccgctacgggttccgtacctggctg
cgcgacctcagcggcgaccaggcacgcattccggagggtgatagccgcattgccgttgaa
tcggtggccccgaccgccgtgcaggccgagtacgaaaccgtgacgacgcccgagcagttg
caggcctgggtggaccgcatcaaccaggcggaactggtggccctggacacggaaaccacc
tcgctggatgcgatgcaggcccggctggttggtctttcgctggcggtgcggccgggccag
gcttgctacattccggtggcgcaccgaggcccggaccaaccggaacaattgccgttggca
caggtgctcgatgctctgcgtccctggctggaagacccgtccaaggccaagctgctgcac
catgccaagtacgatacccatgtgctggccaatgaaggcgtccgcttgctgggcgtcagg
cacgacaccatgctgcaggcctatgcgttggaatcacatcgtagcgtcggcatgaacgag
ctggcgcagcgctggctgggacgttcgggcgtggcctacgaagacctgtgcggcaaaggc
gccaagcagatcggtttcgacgaggtgccgctggaacaggccgcgcactatgccagcgaa
gatgcggatttcacttacgccctgcatgaagcgctgtatccgaaggtgtgcgagcagaag
ggcctgttggccatctacgaactggaaatgctggtgttccacgtgttgtggcaggtggag
cgcaacggtgtgctgatagacgccgccgaactggggcgccagagccacgaaatcggccag
caactggtgacgctcgagcagcgggcctatgaaattgccggccagccgttcaacctcaac
tcacccaagcaactgggggaaatcctgtttggccgcatgcaactgcccgtggtgcgcaag
acggcaggcggcgccccgtcgacggacgaagaagtgctgaccaagctggcgcaggactat
ccgctgccgcaagtgctgctggaataccgtggcctggccaagctgaaatccacctacacc
gacaagttgccgcgcatgatcaacccggccaccgggcgtgtgcataccaactatgcccag
gctgccgtcatcactggcaggttggcctcgtccgaccccaacctgcagaatattcccgtg
cgtaccgaagccggacggcgggtgcggcgggcgttcatcgcgccggccgggcgcgtcatt
ctgtcggctgactattcacagatcgaattgcgcgtcatggcgcatatttctggcgacaag
aacctgcagcaggcgtttgccgacggtaaggacattcaccgtgccacggcctcggaagtg
ttcggggtgccgctcgaagcggtgtcggccgagcagcggcgcgccgccaaggcgatcaat
tttggcctgatctatggcatgagcgccttcgggctggcgggcaaccttggcattacccgc
gacgccgcacaatcgtatatcgaccgctatttccatcgctatcccggtgttgcccgctac
atggacgaaatccgccagcaggcgcgtgaacagggttatgtggaaacggtgttcggccgc
cgcctttggctgccggaaattcgtggcggctctggtccacgtcggcaggctgccgaacgg
gcggccatcaatgcgcccatgcaaggcactgcggcagacctgatcaagaaggcgatggtt
gcagtacaggattggctggctcaggaaaagctcgacagcctgctgatcatgcaggtacat
gacgaactggtgctggaagtgcctaatgccgaactggagcgggtgcgccagcaattgccg
ggcctgatgtgcgatgtggcgacgctggccgtgccgctggtggccgaagtgggcgccggg
caggattgggagcacgcgcactga
DBGET
integrated database retrieval system
