Bordetella sp. J329: CBF45_10980
Help
Entry
CBF45_10980 CDS
T05850
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
boj
Bordetella sp. J329
Pathway
boj03030
DNA replication
boj03430
Mismatch repair
boj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
boj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBF45_10980
03430 Mismatch repair
CBF45_10980
03440 Homologous recombination
CBF45_10980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
boj03032
]
CBF45_10980
03400 DNA repair and recombination proteins [BR:
boj03400
]
CBF45_10980
Enzymes [BR:
boj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CBF45_10980
DNA replication proteins [BR:
boj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CBF45_10980
DNA repair and recombination proteins [BR:
boj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CBF45_10980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AZV94186
LinkDB
All DBs
Position
complement(2478824..2482318)
Genome browser
AA seq
1164 aa
AA seq
DB search
MTASLPATPFVHLRVHSEFSVVDGIIRIPELVKQAAAFGQPAVALTDLANLFGLVKFYKT
ARGAGIKPVAGCDVWLNNDDDPDKPFRILLLVRNWHGYLQLCDLLTRAWLGNTQRGRAQI
RREWLDGADGLIVLSGGRMGDIGQALEAGNPAAAEALARAWQARCPGSFYIELQRAGRDG
DEAYVQAAMRLAAKIGLPVVATHPVQFLKRDDFQAHEARVCIAEGELLGNPRRVRRFSDS
QYLQSSEEMAQRFADVPAALANTVEIARRCNLVMTLGEPQLPNFPTPDGISLDDYLVQLS
REGLEKRLAFLFPDEAQRARARPVYDERLERECRTIIQMGFPGYFLIVADFINWGKGNGV
PVGPGRGSGAGSLVAYSLGITDLDPIRYDLLFERFLNPERVSMPDFDVDFCQDNRERVIE
YVKERYGRDAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSKMIPFNPADPWTLERT
LENEPAFRERYEQEEEVRALVDLARPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGS
ETSVVSQYDKDDVEAVGLVKFDFLGLRNLTILDWAVRYVRQFNPTMRDFDVMALPLDDGN
AYRLLCEGNTTAVFQLESRGMKELLKKLRPSNFEDVIAMLALYRPGPLESGMVDDFVDRK
HGRADVDYFHPDLESTLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEM
AKHRELFEKGAVEKGYDADLAVKLFDLMEKFAGYGFNKSHSAAYALISYQTAWLKHYHPA
EFLAATLSSDMDDTDKVQIFVRDALDNGVKVLPPDVNASAYRFEPVEDEYTAQGKPPRTM
RYGLGAVKGTGQGAVEEILRVRQSGPFRDLFDFCRRIDRHTVNRRTIEALIRAGAFDGLD
DNRAALLASVPLAMEAADQAARSADQVSLFGDDDAAIVVAGELAKVPPWDLRTRLTEEKA
ALGFFFSGHLFDAWRDEVRRFVPTPLTRIGPSRELQWLAGALSSVRTQLTRRGKMLFAVL
DDGTAQLEVSVFNELYEQNRNRLREDQLLIVQGKVSHDDYSGGTRIVAESLFDLQAARET
RAQALRLTLPADKADAAALRRVLNPFRAEPENGVPGVPVEIFYQRHDATALIRLGESWRV
RMADQMFDNLAAWLGTGAVEIRYD
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgactgcatcgcttcccgctactcccttcgtccatctgcgcgtccattccgaattctcg
gtggtggatggcatcatcaggatacccgaactggtcaaacaggccgcggcgttcggccag
ccggccgtggcgctgaccgacctcgccaacctgttcggcctggtcaagttctacaagacc
gccagaggcgccggcatcaagcccgtggcgggctgcgatgtctggctcaacaatgatgac
gatccggacaagccgtttcgcattctgttgctggtgcgcaattggcatgggtacctgcag
ctgtgcgacctgctgacacgcgcctggctgggcaacacgcagcgcgggcgcgcgcagata
cggcgcgaatggctcgatggcgccgatggcctgatcgtgctttccggcggccgcatgggc
gatatcggccaggcgctggaagccggcaacccggcggcagccgaagcgctggcgcgtgcc
tggcaggcgcgttgtcccggtagcttctatatcgaactgcagcgtgccggccgcgatggc
gacgaagcctatgtgcaggctgccatgcgcctggcggccaaaatcggcctgcctgtggtg
gcgacgcatccggtgcagtttctcaagcgcgacgatttccaggcgcacgaggcccgggta
tgcatcgccgagggtgaattgctgggcaatccccgccgcgtgcgtcgtttcagcgacagc
cagtacctgcaaagctccgaggaaatggcgcagcgttttgccgatgtgcctgcggcgctg
gccaataccgtggaaattgccaggcgctgtaacctggtgatgacgctgggcgaaccgcaa
ctgcccaactttcccacgcccgacggcatctcgctggacgattatctggtgcagctgtcg
cgcgaaggcctggaaaagcgcctggcgttcctgttccctgatgaagcgcagcgagccagg
gcgcggcctgtctacgatgagcgcctggagcgcgaatgccgcaccattatccagatgggc
tttcccggttacttcctgatcgtggcggacttcatcaactggggcaagggcaatggcgtg
ccggttggtccgggccggggctcgggtgcgggttcgctcgtggcctacagcctgggtatt
accgacctcgaccccatccgttatgacttgctgttcgagcgcttcctgaacccggagcgg
gtgtccatgcctgacttcgacgtggatttttgtcaggacaaccgcgagcgggtgatcgaa
tatgtgaaggagcgctatggccgcgatgccgtgagccagatcgcaaccttcggtacgttg
ggtgccaaggcggtggtgcgcgacgctggccgggtgctggacatgccctacatgttctgc
gatggcctgtcgaaaatgattcccttcaatccggcggatccctggacgctggagcgtacg
ctggaaaacgagccggccttccgtgaacgctatgagcaggaagaggaagtccgggcgctg
gtggacctggccaggccgctggaaggcctgacgcggaatatcggcatgcacgccggcggc
gttctgatcgcgccgggcaagctgaccgacttctgcccgctgtactgccagcccggcagc
gaaaccagtgtggtgtcgcagtacgacaaggatgacgtcgaagccgtcggcctggtgaag
ttcgacttcctggggctgcgcaacctgaccattctggattgggcagtgcgctatgtgcgc
cagttcaatcccaccatgcgtgatttcgacgtcatggcgctgccgcttgatgacggcaat
gcctaccgtctgctgtgcgaaggcaacaccacggccgtcttccagctggaatcgcgcggc
atgaaggaattgctcaagaagttgcgccccagcaactttgaagacgttatcgctatgctg
gcgctctaccggccggggccgctggaatccggcatggtggatgatttcgtcgaccgtaaa
cacggccgtgccgacgtcgattatttccatcctgacctggagtccacgctcaagagcacc
tacggcgtgattgtgtatcaggaacaggtgatgctgatctcgcagatcatcgggggctat
tcgctgggcggcgccgacttgctgcggcgcgccatgggcaagaaaaagcccgaggaaatg
gccaaacaccgcgagctgttcgagaaaggcgcggtagagaagggctatgacgccgacctg
gcggtcaagctgttcgatctgatggaaaagttcgcgggttatggcttcaacaagtcgcac
tcggccgcctatgcgctgatttcctaccagacggcctggctcaagcactaccatccggcc
gagttcctggccgccacgctgtcgtccgatatggacgacaccgacaaggtccagattttc
gtgcgcgacgcgctggataacggcgtcaaggtgttgccgccggacgtcaatgcgtcggcc
taccgcttcgagccggtcgaggatgaatataccgcgcagggtaagccgccacgcaccatg
cgctacggcctgggcgcggtcaagggcacgggccagggcgccgtcgaggaaatcctcagg
gtgcgccagtccgggccgttccgcgacctgttcgatttctgccgacgtattgaccgccat
accgtcaaccggcgcaccatcgaagcgctgatccgcgctggcgccttcgatggcctggac
gataaccgcgctgcattgctggcgtcggtgccgttggccatggaggctgcggaccaggcg
gcgcgcagcgccgaccaggtatcgctgtttggcgatgatgatgccgccatcgtggtggcc
ggcgaactggccaaggtgccgccctgggacttgcgtacccgtctcaccgaggaaaaagcg
gcgctgggcttctttttcagcggccacctgttcgatgcctggcgcgacgaggtacggcgc
ttcgtacccacgccgctcacgcgcatcgggccgtcgcgcgagttgcaatggctggccggc
gccctcagttccgtgcggacgcagctcacgcggcgcggcaagatgctgttcgcggtgctg
gatgatggcactgcccagctggaggtgtcggtcttcaatgaactctatgagcagaaccgc
aaccgcttgagggaagaccagttgctgatcgtgcagggcaaggtgagccatgacgattac
tcgggtgggacgcgcatcgtggccgaatcgctgttcgacctgcaggcagcacgcgagacg
cgtgcccaggcgctgcgtttgaccttgccggcggacaaggccgatgcagccgcgttgcgg
cgcgtgctcaatccgttccgcgccgaaccggaaaacggcgtacccggcgtgccggtggaa
attttctaccagcggcacgatgccacggcgttgatccggctcggggagtcctggcgagta
cggatggcagatcaaatgtttgacaatttggctgcttggctagggacaggagctgtagag
atccgttacgattga
DBGET
integrated database retrieval system
