Bordetella sp. J329: CBF45_13865
Help
Entry
CBF45_13865 CDS
T05850
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
boj
Bordetella sp. J329
Pathway
boj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBF45_13865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boj03019
]
CBF45_13865
03009 Ribosome biogenesis [BR:
boj03009
]
CBF45_13865
Enzymes [BR:
boj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CBF45_13865
Messenger RNA biogenesis [BR:
boj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBF45_13865
Ribosome biogenesis [BR:
boj03009
]
Prokaryotic type
rRNA processing factors
CBF45_13865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_Tnp_IS1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AZV94673
LinkDB
All DBs
Position
3127963..3131355
Genome browser
AA seq
1130 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEERHGFLPFKEVARSYFKDGVEVRSARIQDALTEGQEIIVQVEKEERGNKGAALTTFIS
LAGRHLVLMPNNPRGGGVSRRVEGEERQELRDAMDQLNIPQGMSVIARTAGIGRSVEELQ
WDLSYLQQLWDAIDTAARDNAAPVLIYLESSLVIRAIRDYFSPDIGEILIDTDDIADQAT
AFMSVVMPDNVNRVKRYRDDIPLFSRFQIEHQIETAYARTVELPSGGAVVIDHTEALVAV
DVNSARSTRGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALRFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
ILRLIQEEAMKDNTAAVHAQVPVDVATFLLNEKRGDIAKLEARLKVNVILIPNKNLETPH
HSLERLRHDDPRLEETKPSFTLAEAAAEVSVWKAREENTKPRQEALVKGVTPETPAPLHT
PRPAAAAAGTSDSAAGGIAGLFKRIAAWFGGSTTESKPVAQPASAKPAGTRPEGASSRRQ
SDSRQQNGERQRNNRRNGSERRAPETTEAGSTAASQQQERRQPRTPRNADARDAVRQHQV
ATRHQDAQAPAPAAAEGEDGSPRNSRNRRSRSRGGRREDLALNGDVQATDTNANVLPVAA
AGIAASATAEAGIPQAAPVAAAQSLDQGDDSQDLDALRQDGADDNGEADPERKRRRRRSR
RGRRQTGDENGTQLDGENSNEDGSSVQAAADDETSAAAPVAAVAAIAATVQSAAASEAQA
VAPTITPDAEAPATTLADDASPAAEAAAPAAVSTAPVQAQAVQAAQEPAAAEALASLAEP
QEAAAQPVQADAAVAPEQVSATQETLAAAVETAENSATATTAEASISASDDAAVVVEITA
AQPAEQQAADAVVTTNAAQAVQPEQAEPAVPVKQAPVQAVHAENTAAAAATPAAQTVEMA
EAAQAEQAAQAAESVESTVSNIETVVEQAIQVPAAASSHGSANGQAQPLESVIAAAGLQW
VETRHDAVTPAANAAPAVKLGRPRKTAAAAPAPVALQQVETADADAPHAG
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgttcaatgcaacgcaccaggaagaactgcgcgttgccatcgtcgac
gggcaaaagctcatcgacctagacattgagactgccggccgcgagcaacgcaaaggcaat
atctacaagggcgtcatcacccgtatcgaaccaggtctggaagcctgcttcgtcaattac
ggcgaagagcgccatggcttcctgccgttcaaggaagtcgcgcgcagctacttcaaggac
ggcgttgaagttcgcagcgcccgcatccaggatgccctgaccgaaggccaggaaatcatc
gtccaggtcgagaaggaagaacgcggcaacaagggtgccgcattgaccaccttcatttcg
ctggctggccgccatctggtcctgatgcccaacaacccgcgtggcggtggcgtttcgcgc
cgcgtcgagggcgaagagcgccaggaactgcgcgacgcgatggaccagctcaacattccg
caaggtatgagcgtcatcgcccgcactgccggcatcggccgcagtgtggaagaattgcag
tgggacctctcctacctgcagcagctctgggacgccatcgacaccgccgcgcgcgacaac
gctgcgccagtgctgatctacctggaatccagcctagtcatccgcgccatccgcgattat
ttctcgccagatatcggtgaaattctcatcgacaccgacgacatcgccgatcaggccacg
gctttcatgagcgtcgtgatgccggacaacgtcaaccgcgtcaagcggtatcgtgacgat
atcccgctattctcgcgcttccagatcgaacaccagatcgaaaccgcctacgcccgcacg
gtggaactgccctccggcggcgcggtggtcatcgaccataccgaagccctggtcgccgtc
gacgtcaactcggcccgctccacgcgtggcgccgacatcgaggaaaccgcgctgcgcacc
aacctcgaagccgccgacgaagtggcccgtcagctgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaggacagcaagaaccagcgcgccgtcgaacagcgc
ctgcgcgatgccctccgtttcgaccgtgcccgcgtgcaaatgggcaagatttcgcgcttc
ggcctgatggaactgtcgcgccagcgcctgcgcccggccctgaacgaaggctcgcacatc
acctgcccgcgctgcaacggcaccggcgtgatccgcgacgcggaatccagcgcgctgcac
atcctgcgcctgatccaggaagaagccatgaaggacaacaccgccgccgtgcatgcacag
gtgccggtggatgtcgccaccttcctgctcaacgaaaaacgcggcgatatcgccaagctt
gaagcccgcctcaaggtcaacgtcatcctgattccgaacaagaacctggaaacgccgcac
cacagcctggagcgcctgcgtcacgacgatccgcgcctggaagaaaccaagcccagcttc
acgctggctgaagccgccgccgaagtctcggtctggaaggctcgcgaagaaaataccaag
ccgcgccaggaagccctggtcaagggtgtgacgccggaaactcccgcaccgctgcatacg
ccgcgtcctgccgccgctgccgcaggtaccagcgacagcgctgccggcggcattgccggc
ctgttcaagcgtattgccgcctggttcggcggcagcacgacggaaagcaagcctgtcgcg
caaccggccagcgccaagcccgccggcactcgtccggaaggcgcatcctcgcgccgccag
tcggattcgcgccagcaaaacggcgaacgccagcgcaataatcgccgcaatggcagcgaa
cgccgcgccccggaaaccacagaagccggcagtaccgctgccagccagcaacaggaacgc
cgccagccgcgcacgccccgcaacgcagatgcccgcgatgccgtgcgccagcaccaggtc
gccacgcgtcaccaggatgcccaggcccccgcgcctgccgccgccgaaggtgaagacggc
agcccgcgcaactcccgcaaccgccgcagccgcagccgtggtggccgccgtgaagatctc
gccctgaacggcgacgtccaggcgacggacacgaacgccaacgtcctgcccgtggccgcc
gccggcattgccgccagcgccacggcggaagccggcataccgcaggccgcgccggtagcc
gccgcgcaatccctggaccagggcgatgacagccaggacctggatgcactgcgccaggac
ggcgctgacgacaacggtgaagccgatccggaacgcaagcgccgccgtcgccgcagccgt
cgtggccgccgtcagaccggcgacgagaacggcacgcagctcgatggcgaaaacagcaac
gaagatggcagctccgtccaggcagcagccgatgacgaaaccagcgcagccgcgccggtc
gctgccgttgccgccattgccgctaccgtacagagcgcagcagcctcggaagcccaggcc
gttgctccgacaatcacccctgacgctgaagcgcccgcaacgacgctagccgacgacgcc
agccccgctgccgaagccgctgcacccgccgctgtcagcaccgcgccggtacaggcgcaa
gccgtgcaagccgcacaggaaccggcggctgccgaagcccttgcaagccttgctgaaccc
caggaagcggccgcccagccggttcaggccgacgctgccgtcgcaccggaacaggtatct
gccacgcaggaaacgctggctgcagccgtggaaactgccgagaacagcgctaccgccacc
accgccgaagccagcatcagcgcctctgacgatgcggccgtcgtagtggaaatcacggct
gcgcaacccgcagaacagcaggctgccgatgccgtcgtaacaaccaacgcggcccaggcc
gtgcagccggaacaagccgaacctgccgtaccggtgaaacaggcgccggtgcaggccgta
cacgccgaaaacacggcagcagcagccgccacacccgccgcacaaacggtagaaatggca
gaagcagcacaggcggaacaggcagcacaagccgctgaatcggttgaaagcaccgtcagc
aacatcgaaacggtggtcgagcaagccatccaggtgcctgctgccgctagcagccacggt
agcgccaacggtcaggcgcagcccctggaatccgtcatcgctgctgcaggcctgcagtgg
gtcgagacccgccacgatgccgtcacaccggcagccaacgctgcgcccgccgtcaagctc
ggccgcccgcgcaagacggctgctgccgcaccggcacctgttgccctgcagcaagtggaa
accgctgacgcggacgcccctcacgccggttga
DBGET
integrated database retrieval system
