Burkholderia oklahomensis EO147: DM82_125
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Entry
DM82_125 CDS
T03284
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bok
Burkholderia oklahomensis EO147
Pathway
bok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM82_125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bok03019
]
DM82_125
Enzymes [BR:
bok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DM82_125
Messenger RNA biogenesis [BR:
bok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DM82_125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Ric8
CMS1
DegT_DnrJ_EryC1
Sacchrp_dh_NADP
Cas3-like_C_2
CARD_2
Motif
Other DBs
NCBI-ProteinID:
AIO66355
UniProt:
A0AAI8B684
LinkDB
All DBs
Position
1:complement(158736..160199)
Genome browser
AA seq
487 aa
AA seq
DB search
MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPK
KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRD
IERLIKREISQEVIAGFEPDPNAKPEPIQRRGQRGGDGGGAGTGGRSGGGNRAPRAANQG
QAPGQPAARRDGGAQTKAAPPKAAQPKAAKPQQARGGSGRPAGSGNANGGGAHANRNRSS
RSGQRGH
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgcatctctcggcctcgccgaaccactcgtgcgggccgtcaacgagctgggc
tacacgcagcccacgccgatccaggcccaggccatccccgccgtgctgggcggcggcgat
cttctcgccggcgcgcagacgggcaccggcaagacggccggcttcacgctgccgatcctg
caacgcctgcacacgttctacgcggaaaaccgcggcgcgcggcgcgcggtgcgcgccctc
atcctcacgccgacgcgcgagctcgccgcgcaggtcgaggaaagcgtgcgcgcatacagc
aagtacgtgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgctgaagcgcggcgtcgacatcgtcgtcgcgacgccggggcgcctgctcgatcac
atgcagcaaaagacgatcgacgtgtcgagcctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgaag
aaacgccagaacctcctgttctcggcaaccttctccgacgagatcaagtcgctcgcggac
agtctgctcgactcgcccgcgctgatcgaagtcgcccgccgcaacacgacggccgagacg
gtcgcgcagaagatccacccggtcgaccgcgaccgcaagcgcgagctgctcacgcatctg
atccgcgagcacaactggttccaggtgctcgtgttcacgcgcacgaagcacggcgcgaac
cggctcgccgagcagctgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcgcgcacgcgcgccctcgccgagttcaagagcagcacgctgcaggtgctc
gtcgcgaccgacatcgccgcgcgcgggatcgacatcgatcaattgccgcacgtcgtcaac
ttcgatctgccgaacgtgcccgaagactacgtgcaccggatcggccgcaccggccgcgcg
ggcgcgaacggcgaggcggtgtcgctcgtgtgcgtcgacgagaagcagttgctgcgcgac
atcgagcggctcatcaagcgcgagatctcgcaggaagtgattgcgggcttcgagccggat
ccgaacgcgaagccggagccgatccagcggcgcgggcagcgcggcggggatggcggcggc
gcgggcaccggcggccgcagcggcggcggcaatcgcgcgccgcgggccgcgaatcagggg
caagcgccgggccagcccgccgcgcgtcgcgacggcggcgcgcagacgaaggctgcgcca
ccgaaggccgcgcaacccaaggccgcgaagccgcagcaagcgcgcggcggcagcggacga
ccggcgggcagcggcaacgcgaacggcggcggcgcgcatgcgaaccgcaatcgttcgtcg
cgcagcggtcagcgcggccattga
DBGET
integrated database retrieval system
